Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RN7SKP18-201ENST00000516005 275 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 RNU6-123P-201ENST00000516163 102 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 RNU4ATAC3P-201ENST00000516699 126 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 FGF7P1-201ENST00000582820 288 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 AC002545.1-201ENST00000592511 181 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 AC007687.1-201ENST00000602704 304 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 DPPA3P3-201ENST00000603842 430 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 AL670379.4-201ENST00000605279 254 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 AL390240.1-201ENST00000612950 384 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 AC104985.2-201ENST00000620598 500 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 RNU6-845P-201ENST00000362578 103 ntBASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 RNU6-797P-201ENST00000363101 109 ntBASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 AL592114.1-201ENST00000403842 483 ntBASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 AC126124.2-201ENST00000413542 321 ntBASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 AC093578.1-201ENST00000415219 368 ntBASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 ELOCP23-201ENST00000452014 332 ntBASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 AC007547.1-201ENST00000462177 490 ntBASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 RPL21P104-201ENST00000464143 478 ntBASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 AL158032.1-201ENST00000605401 106 ntBASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 AC009994.1-201ENST00000606889 253 ntBASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 AC103710.3-201ENST00000608157 948 ntBASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 MIR7851-201ENST00000610611 160 ntBASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 AC093913.1-201ENST00000614178 329 ntBASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 AL121772.2-201ENST00000614331 297 ntBASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 Y_RNA.804-201ENST00000615262 101 ntBASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 AC017071.1-201ENST00000564407 2204 ntBASIC4.03□□□□□ -1.76
LIMCH1Q9UPQ0 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 OR4G2P-202ENST00000641004 1759 ntBASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 AC007496.3-201ENST00000624987 3443 ntBASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 RNU6-600P-201ENST00000362524 99 ntBASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 RNU6-82P-201ENST00000363970 107 ntBASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 RNU4-20P-201ENST00000365601 151 ntBASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 MT-TD-201ENST00000387419 68 ntBASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 RPS12P24-201ENST00000412619 387 ntBASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 RPL31P12-201ENST00000422587 358 ntBASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 AL591212.2-201ENST00000433923 257 ntBASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 RPL7P12-201ENST00000446719 750 ntBASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 RNU6-507P-201ENST00000516045 100 ntBASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 OR5D17P-201ENST00000531492 978 ntBASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 AC023050.3-201ENST00000541142 333 ntBASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 PSMA3P-201ENST00000555485 635 ntBASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 AC005261.5-201ENST00000596280 355 ntBASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 AC013553.2-201ENST00000604244 589 ntBASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LIMCH1Q9UPQ0 Y_RNA.166-201ENST00000363730 102 ntBASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 RNU6-116P-201ENST00000384042 109 ntBASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 RN7SKP111-201ENST00000410349 271 ntBASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 RNA5SP111-201ENST00000411386 101 ntBASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 RPL35AP12-201ENST00000425362 338 ntBASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 MTCO3P46-201ENST00000425787 232 ntBASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 AC093019.1-201ENST00000443135 252 ntBASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 AC104058.1-201ENST00000448028 297 ntBASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 RPL23AP14-201ENST00000468281 468 ntBASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 RPS20P22-201ENST00000473700 357 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms