Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MIR622-201ENST00000638396 96 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
VPS28Q9UK41 ELF2P3-201ENST00000445099 1506 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS28Q9UK41 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS28Q9UK41 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.17□□□□□ -1.9
VPS28Q9UK41 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS28Q9UK41 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS28Q9UK41 SNORA51.4-201ENST00000364993 124 ntBASIC3.17□□□□□ -1.9
VPS28Q9UK41 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
VPS28Q9UK41 RNU6-297P-201ENST00000384636 107 ntBASIC3.17□□□□□ -1.9
VPS28Q9UK41 MIR301A-201ENST00000385261 86 ntBASIC3.17□□□□□ -1.9
VPS28Q9UK41 SNORD67-201ENST00000390833 111 ntBASIC3.17□□□□□ -1.9
VPS28Q9UK41 SNORA48.2-201ENST00000390926 124 ntBASIC3.17□□□□□ -1.9
VPS28Q9UK41 AL138885.1-201ENST00000405921 675 ntBASIC3.17□□□□□ -1.9
VPS28Q9UK41 AC080125.1-201ENST00000414888 684 ntBASIC3.17□□□□□ -1.9
VPS28Q9UK41 SDCBPP3-201ENST00000419629 891 ntBASIC3.17□□□□□ -1.9
VPS28Q9UK41 RPL7P37-201ENST00000425095 738 ntBASIC3.17□□□□□ -1.9
VPS28Q9UK41 SAR1AP4-201ENST00000429225 591 ntBASIC3.17□□□□□ -1.9
VPS28Q9UK41 RPL23AP30-201ENST00000432419 501 ntBASIC3.17□□□□□ -1.9
VPS28Q9UK41 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC3.17□□□□□ -1.9
VPS28Q9UK41 UQCRHP3-201ENST00000451503 251 ntBASIC3.17□□□□□ -1.9
VPS28Q9UK41 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS28Q9UK41 RPS15AP34-201ENST00000487776 387 ntBASIC3.17□□□□□ -1.9
VPS28Q9UK41 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS28Q9UK41 AC105252.1-201ENST00000503089 286 ntBASIC3.17□□□□□ -1.9
VPS28Q9UK41 AC113155.1-201ENST00000511141 769 ntBASIC3.17□□□□□ -1.9
VPS28Q9UK41 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS28Q9UK41 AC008885.1-201ENST00000514930 301 ntBASIC3.17□□□□□ -1.9
VPS28Q9UK41 AP002404.1-201ENST00000532005 451 ntBASIC3.17□□□□□ -1.9
VPS28Q9UK41 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS28Q9UK41 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS28Q9UK41 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS28Q9UK41 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
VPS28Q9UK41 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS28Q9UK41 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS28Q9UK41 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS28Q9UK41 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS28Q9UK41 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS28Q9UK41 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 RNU6-641P-201ENST00000384006 107 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 Y_RNA.534-201ENST00000384599 112 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 RNU2-39P-201ENST00000410604 198 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 RNU2-49P-201ENST00000410666 184 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 RNU6-248P-201ENST00000410720 107 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 Z92545.1-201ENST00000411782 234 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 AC023141.4-201ENST00000412031 328 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 AL109913.1-201ENST00000421173 514 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 ISCA1P6-201ENST00000427740 390 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 AL591704.1-201ENST00000432574 275 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 MTND1P27-201ENST00000451117 902 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 FABP5P13-201ENST00000452144 328 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 RPL31P41-201ENST00000477967 372 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 RPS29P2-201ENST00000479278 136 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 SEM1P1-201ENST00000506694 209 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 AC117522.1-201ENST00000509821 380 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 RNU6-914P-201ENST00000516749 109 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 SNORA18.6-201ENST00000516792 115 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 RN7SKP282-201ENST00000516824 299 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 AP003122.3-201ENST00000526316 255 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 AC084851.1-201ENST00000529105 249 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 AC010546.1-201ENST00000569391 485 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS28Q9UK41 MIR3167-201ENST00000579623 85 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 AC090578.1-201ENST00000604955 591 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS28Q9UK41 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 AC138915.1-201ENST00000565427 1685 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS28Q9UK41 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS28Q9UK41 TEX21P-201ENST00000447107 1476 ntBASIC3.16□□□□□ -1.9
VPS28Q9UK41 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.15□□□□□ -1.9
VPS28Q9UK41 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
VPS28Q9UK41 MTND4P35-201ENST00000604257 1375 ntBASIC3.15□□□□□ -1.9
VPS28Q9UK41 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
VPS28Q9UK41 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.15□□□□□ -1.91
VPS28Q9UK41 NACAP2-201ENST00000318548 624 ntBASIC3.15□□□□□ -1.91
VPS28Q9UK41 RNU6-525P-201ENST00000363685 104 ntBASIC3.15□□□□□ -1.91
VPS28Q9UK41 Y_RNA.201-201ENST00000364052 96 ntBASIC3.15□□□□□ -1.91
VPS28Q9UK41 RNU6-658P-201ENST00000384606 106 ntBASIC3.15□□□□□ -1.91
VPS28Q9UK41 RNU6-195P-201ENST00000411352 109 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 160.6 ms