Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC105245.1-201ENST00000581934 244 ntBASIC1.31□□□□□ -2.2
SCN3AQ9NY46 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC1.31□□□□□ -2.2
SCN3AQ9NY46 AC005296.1-201ENST00000616145 209 ntBASIC1.31□□□□□ -2.2
SCN3AQ9NY46 AC004009.2-201ENST00000623016 728 ntBASIC1.31□□□□□ -2.2
SCN3AQ9NY46 AC040168.1-201ENST00000623594 991 ntBASIC1.31□□□□□ -2.2
SCN3AQ9NY46 AC004520.1-201ENST00000608362 1413 ntBASIC1.31□□□□□ -2.2
SCN3AQ9NY46 AC005539.1-201ENST00000443768 1479 ntBASIC1.31□□□□□ -2.2
SCN3AQ9NY46 RNU6-582P-201ENST00000362989 107 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 SNORD115-48-201ENST00000364764 76 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 MIR514A1-201ENST00000385133 98 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 MIR1290-201ENST00000408735 78 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 RNU2-42P-201ENST00000410697 113 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC1.3□□□□□ -2.2
SCN3AQ9NY46 HMGB1P27-201ENST00000431429 603 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC1.3□□□□□ -2.2
SCN3AQ9NY46 AC132942.1-201ENST00000486753 483 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 RPL30P5-201ENST00000494923 336 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 AC093752.1-206ENST00000511823 336 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC1.3□□□□□ -2.2
SCN3AQ9NY46 AC023813.2-201ENST00000564321 469 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
SCN3AQ9NY46 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC1.3□□□□□ -2.2
SCN3AQ9NY46 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.3□□□□□ -2.2
SCN3AQ9NY46 AL157834.3-201ENST00000615543 103 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 AC025048.6-202ENST00000627667 438 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 HPVC1-201ENST00000629899 1198 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
SCN3AQ9NY46 MTND5P10-201ENST00000603719 1809 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 CCNG1P1-201ENST00000406783 885 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 AL133264.1-201ENST00000407157 562 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 MIR1285-1-201ENST00000408593 84 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.3□□□□□ -2.2
SCN3AQ9NY46 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC1.3□□□□□ -2.2
SCN3AQ9NY46 MRPL42P4-201ENST00000453267 443 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 DYNLL1P5-201ENST00000467158 270 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 MTCYBP18-201ENST00000501056 747 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC1.3□□□□□ -2.2
SCN3AQ9NY46 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC1.3□□□□□ -2.2
SCN3AQ9NY46 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC1.3□□□□□ -2.2
SCN3AQ9NY46 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
SCN3AQ9NY46 AL359821.1-201ENST00000605519 182 ntBASIC1.3□□□□□ -2.2
SCN3AQ9NY46 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
SCN3AQ9NY46 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
SCN3AQ9NY46 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AC080100.1-201ENST00000624239 5356 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
SCN3AQ9NY46 RNU6-657P-201ENST00000383904 107 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 CISD1P1-201ENST00000393907 327 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AL356131.1-201ENST00000405826 414 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.29□□□□□ -2.2
SCN3AQ9NY46 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AL049734.2-201ENST00000441066 616 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 MTCYBP11-201ENST00000447254 1109 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC1.29□□□□□ -2.2
SCN3AQ9NY46 SUMO2P6-201ENST00000505273 288 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC1.29□□□□□ -2.2
SCN3AQ9NY46 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AC006518.2-201ENST00000542513 940 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC1.29□□□□□ -2.2
SCN3AQ9NY46 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.29□□□□□ -2.2
SCN3AQ9NY46 MIR4666A-201ENST00000580160 79 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AP001542.2-201ENST00000593141 364 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AL161729.4-201ENST00000604650 476 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AL391813.2-201ENST00000609113 322 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AC011939.3-201ENST00000613686 466 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AL353770.2-201ENST00000620024 78 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AC090772.4-201ENST00000623599 362 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AC073308.1-201ENST00000623696 305 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AC080188.3-201ENST00000624842 748 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 AL590396.4-201ENST00000636779 956 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 WWP1P1-201ENST00000466609 2769 ntBASIC1.29□□□□□ -2.2
SCN3AQ9NY46 HMGB1P5-201ENST00000255320 642 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
SCN3AQ9NY46 SNRPEP3-201ENST00000338402 276 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 OR1L1-202ENST00000373686 1083 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 SNORA67.6-201ENST00000391093 99 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AL136133.1-201ENST00000413694 376 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AL592310.1-201ENST00000414330 671 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AC009237.2-201ENST00000421358 284 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.28□□□□□ -2.2
SCN3AQ9NY46 PSMA6P3-201ENST00000428242 164 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 GTF2IP20-201ENST00000431663 360 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC1.28□□□□□ -2.2
SCN3AQ9NY46 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AC108078.2-201ENST00000510750 236 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 SCARNA15.2-201ENST00000516409 127 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AC026741.1-201ENST00000605892 482 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC1.28□□□□□ -2.2
SCN3AQ9NY46 CDC27P3-201ENST00000635418 1910 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AP003399.1-201ENST00000637534 361 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AP000648.3-201ENST00000623539 4507 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC1.28□□□□□ -2.2
SCN3AQ9NY46 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
SCN3AQ9NY46 RNU5A-1-201ENST00000362698 116 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 128.9 ms