Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RAC1P9-201ENST00000604990 392 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 AL159153.1-201ENST00000619688 317 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC140Q96MF4 AL592182.3-201ENST00000642132 3304 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC140Q96MF4 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC140Q96MF4 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC3.85□□□□□ -1.79
CCDC140Q96MF4 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC140Q96MF4 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC140Q96MF4 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.79
CCDC140Q96MF4 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC140Q96MF4 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC140Q96MF4 Y_RNA.64-201ENST00000362845 102 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 RNA5SP507-201ENST00000363603 121 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 SNORA63.7-201ENST00000365579 123 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 Y_RNA.396-201ENST00000383949 103 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 Y_RNA.471-201ENST00000384312 102 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
CCDC140Q96MF4 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
CCDC140Q96MF4 MTCYBP2-201ENST00000407745 171 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 RN7SKP213-201ENST00000410746 298 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 RN7SKP106-201ENST00000410832 272 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AC074117.2-201ENST00000417130 397 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AC073910.1-201ENST00000445047 438 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.84□□□□□ -1.79
CCDC140Q96MF4 BTF3P6-201ENST00000448054 499 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AC073850.1-201ENST00000449243 255 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AL353705.4-201ENST00000449661 238 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AC012308.1-201ENST00000451232 178 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC140Q96MF4 RPSAP50-201ENST00000481955 852 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AC091874.1-201ENST00000511402 339 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AC093840.1-201ENST00000511599 336 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 RN7SKP66-201ENST00000516681 231 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AC022882.1-201ENST00000532142 501 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 HIGD1AP1-201ENST00000550979 275 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AC021739.1-201ENST00000559631 174 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AC104581.2-201ENST00000572227 430 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AC024220.1-201ENST00000603675 484 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 MIR7155-201ENST00000615925 56 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AL731566.2-201ENST00000618971 317 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AC024581.2-201ENST00000619986 252 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 AC019206.1-201ENST00000621938 425 ntBASIC3.84□□□□□ -1.79
CCDC140Q96MF4 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
CCDC140Q96MF4 GHR-202ENST00000357703 4316 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC140Q96MF4 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CCDC140Q96MF4 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CCDC140Q96MF4 AC010733.2-201ENST00000589496 5702 ntBASIC3.84□□□□□ -1.8
CCDC140Q96MF4 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CCDC140Q96MF4 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.8
CCDC140Q96MF4 MTND5P7-201ENST00000413558 1798 ntBASIC3.84□□□□□ -1.8
CCDC140Q96MF4 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CCDC140Q96MF4 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 AP000560.1-201ENST00000624150 1937 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 Z75746.1-201ENST00000440243 2080 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 AC092435.4-201ENST00000623012 4159 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 Y_RNA.19-201ENST00000362462 99 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 Y_RNA.26-201ENST00000362539 101 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 RNU6-806P-201ENST00000365147 105 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 RNU6-1318P-201ENST00000365389 103 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 RNU6-968P-201ENST00000384076 107 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 MIR544A-201ENST00000384855 91 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 MIR937-201ENST00000401271 86 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 AL078599.1-201ENST00000402075 293 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 RBMY1KP-201ENST00000423480 476 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 AC005300.1-201ENST00000428401 373 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 RN7SL319P-201ENST00000480656 221 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 RPS23P1-201ENST00000491662 432 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 ENPP7P9-201ENST00000514456 627 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 SNORA25.11-201ENST00000515935 105 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 RNU6-897P-201ENST00000517135 105 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 AP006245.2-201ENST00000522004 300 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 IGHV3-76-201ENST00000522465 295 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 AC005868.1-201ENST00000536421 331 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 AL391261.3-201ENST00000557194 520 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 HMGN2P15-201ENST00000585707 270 ntBASIC3.83□□□□□ -1.8
CCDC140Q96MF4 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC140Q96MF4 AC125232.2-201ENST00000592457 143 ntBASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 134 ms