Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 DDX18P3-201ENST00000404856 2007 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AC103710.2-202ENST00000641454 2853 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 XIAPP3-201ENST00000312918 795 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 Y_RNA.5-201ENST00000362334 102 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 RNU6-1284P-201ENST00000363701 100 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 RNU6-637P-201ENST00000384050 107 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 RNU6-310P-201ENST00000384655 107 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AL109755.1-201ENST00000401791 649 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 Z92545.1-201ENST00000411782 234 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 RPS12P5-201ENST00000423449 371 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 MTCYBP10-201ENST00000424905 650 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 SNAP23P1-201ENST00000433229 246 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 NDUFB1P1-201ENST00000435191 180 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 RPL23AP55-201ENST00000498163 452 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 HIGD1AP13-201ENST00000509878 289 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AC108078.2-201ENST00000510750 236 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 MTCO3P44-201ENST00000510977 541 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 RN7SKP57-201ENST00000517248 293 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 RNU6-794P-201ENST00000517261 64 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AC068446.3-201ENST00000555285 382 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 MIR4680-201ENST00000580906 66 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AL355812.1-201ENST00000603215 216 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 DUSP12P1-201ENST00000612874 516 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AL138726.1-201ENST00000614873 333 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AL355365.1-201ENST00000616480 294 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AC022418.1-201ENST00000624118 445 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 AL049781.1-201ENST00000623195 3585 ntBASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
USHBP1Q8N6Y0 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 RNU1-33P-201ENST00000364249 162 ntBASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 RNU6-593P-201ENST00000364716 112 ntBASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 RNU6-1032P-201ENST00000384100 107 ntBASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 RNU2-47P-201ENST00000410649 186 ntBASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 RNA5SP146-201ENST00000410743 123 ntBASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 AC018865.2-201ENST00000423631 129 ntBASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 AL160004.2-201ENST00000432935 350 ntBASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 AL162388.1-201ENST00000450912 352 ntBASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 MIR2053-201ENST00000459295 91 ntBASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 AC008526.1-201ENST00000509149 338 ntBASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 AC100870.1-201ENST00000522035 505 ntBASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 RANP3-201ENST00000530970 276 ntBASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 AC008269.2-201ENST00000561915 1105 ntBASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 AC106782.4-201ENST00000568264 210 ntBASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 AC005000.2-201ENST00000605468 310 ntBASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
USHBP1Q8N6Y0 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 SAGE2P-201ENST00000420011 2126 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 Y_RNA.135-201ENST00000363439 95 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 RNU6-1040P-201ENST00000383974 107 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 RNU6-1127P-201ENST00000384580 107 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 MRPL42P3-201ENST00000401492 326 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 AL391417.1-201ENST00000404100 426 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 Y_RNA.646-201ENST00000410980 101 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 RNA5SP306-201ENST00000411087 107 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 AC005326.1-201ENST00000429197 123 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 AC104058.1-201ENST00000448028 297 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 RPS15AP27-201ENST00000449183 343 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 RBMY2UP-201ENST00000453474 324 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms