Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.51□□□□□ -1.53
SH3RF1Q7Z6J0 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SH3RF1Q7Z6J0 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 RNU6-512P-201ENST00000364438 103 ntBASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 RNU6-1035P-201ENST00000384477 107 ntBASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 RNU6-417P-201ENST00000384712 107 ntBASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 RNU6-1025P-201ENST00000410629 104 ntBASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 ELOCP19-201ENST00000411919 318 ntBASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 BX510359.2-201ENST00000417920 305 ntBASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 RPL36AP10-201ENST00000421785 322 ntBASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 MTCO1P5-201ENST00000433573 344 ntBASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 RPL12P46-201ENST00000436610 195 ntBASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 HSPE1P25-201ENST00000455484 251 ntBASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 RPL23AP56-201ENST00000460778 453 ntBASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 AC087588.1-201ENST00000462203 316 ntBASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 AL356218.2-201ENST00000605264 187 ntBASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 MIR8069-1-201ENST00000616627 86 ntBASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 AL022401.1-201ENST00000619498 108 ntBASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 MIR8069-2-201ENST00000621412 86 ntBASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SH3RF1Q7Z6J0 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 Y_RNA.240-201ENST00000364469 95 ntBASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 RNU6-326P-201ENST00000365480 107 ntBASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 Y_RNA.398-201ENST00000383952 99 ntBASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 SNORA48.7-201ENST00000391302 135 ntBASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 RNU6ATAC15P-201ENST00000408279 121 ntBASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 U3.39-201ENST00000408569 239 ntBASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 AL513331.1-201ENST00000411908 397 ntBASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 RNU2-31P-201ENST00000516954 155 ntBASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 AC025755.1-201ENST00000521306 278 ntBASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 AC027288.2-201ENST00000553028 243 ntBASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SH3RF1Q7Z6J0 AL022311.1-201ENST00000623726 19416 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 RNA5SP447-201ENST00000363749 119 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 Y_RNA.383-201ENST00000383855 97 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 SNORD63-201ENST00000384262 68 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 Y_RNA.590-201ENST00000410140 107 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 TMSB10P2-201ENST00000416049 131 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 AL117339.3-201ENST00000418733 162 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 AL158156.1-201ENST00000422509 473 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 RPS20P1-201ENST00000434853 354 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 RPL37P6-202ENST00000464216 403 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 RPL23AP45-201ENST00000476406 468 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 RNU6-513P-201ENST00000516104 104 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 RNA5SP464-201ENST00000516251 108 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 Y_RNA.719-201ENST00000517156 106 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 AC120057.2-201ENST00000571520 271 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 AC090617.3-201ENST00000573670 475 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 AC008121.1-201ENST00000603244 268 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 SRGNP1-201ENST00000603392 451 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 AC011476.5-201ENST00000615594 130 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 SCARNA15-201ENST00000607520 4325 ntBASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.48□□□□□ -1.53
SH3RF1Q7Z6J0 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.47□□□□□ -1.53
SH3RF1Q7Z6J0 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SH3RF1Q7Z6J0 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SH3RF1Q7Z6J0 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SH3RF1Q7Z6J0 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.47□□□□□ -1.53
SH3RF1Q7Z6J0 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.47□□□□□ -1.53
SH3RF1Q7Z6J0 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SH3RF1Q7Z6J0 Y_RNA.233-201ENST00000364407 101 ntBASIC5.47□□□□□ -1.53
SH3RF1Q7Z6J0 Y_RNA.418-201ENST00000384029 102 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms