Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MIR1-2-201ENST00000384961 85 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 RNA5SP38-201ENST00000410750 119 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC3.42□□□□□ -1.86
HDAC4P56524 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC3.42□□□□□ -1.86
HDAC4P56524 EIF1P1-201ENST00000421436 341 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HDAC4P56524 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.42□□□□□ -1.86
HDAC4P56524 OR2AS1P-201ENST00000427827 319 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 AC093106.2-201ENST00000428212 385 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 AC236972.1-201ENST00000433225 199 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 Z99127.3-201ENST00000448158 395 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.42□□□□□ -1.86
HDAC4P56524 RPL21P10-201ENST00000463521 490 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 AL121769.1-201ENST00000469473 401 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 RN7SL601P-201ENST00000471221 293 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 RPS26P21-201ENST00000475397 348 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 RN7SL283P-201ENST00000489055 303 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 AC009646.1-201ENST00000510455 318 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 AC010493.1-201ENST00000513479 292 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 SCARNA15.2-201ENST00000516409 127 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 RN7SKP282-201ENST00000516824 299 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 AC090136.1-201ENST00000520009 240 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.42□□□□□ -1.86
HDAC4P56524 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC3.42□□□□□ -1.86
HDAC4P56524 NCAPGP2-201ENST00000557911 754 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 MTATP6P3-201ENST00000581686 676 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 AL162713.1-201ENST00000604480 262 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 AP002360.4-201ENST00000606980 481 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
HDAC4P56524 AC073534.2-201ENST00000620377 381 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 MIR3651-201ENST00000630427 90 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.42□□□□□ -1.86
HDAC4P56524 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
HDAC4P56524 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.42□□□□□ -1.86
HDAC4P56524 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HDAC4P56524 Z83843.1-201ENST00000604070 3685 ntBASIC3.42□□□□□ -1.86
HDAC4P56524 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HDAC4P56524 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HDAC4P56524 RNA5SP383-201ENST00000362934 120 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 RNA5SP267-201ENST00000364893 126 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 RNU6-456P-201ENST00000384493 107 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 MIR558-201ENST00000384920 94 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 RNU6-1197P-201ENST00000391183 107 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 RN7SKP123-201ENST00000410732 291 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.41□□□□□ -1.86
HDAC4P56524 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.41□□□□□ -1.86
HDAC4P56524 GPR143P-201ENST00000434155 205 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 AC092573.2-201ENST00000434546 243 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 AC020550.1-201ENST00000447385 163 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 HMGN1P18-201ENST00000457642 277 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 RPS20P20-201ENST00000460498 340 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 RN7SL432P-201ENST00000484057 298 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 AC023194.1-201ENST00000493084 308 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 HSPD1P15-201ENST00000505573 1122 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 SNORA31.1-201ENST00000515993 133 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 SNORA31.5-201ENST00000516190 133 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 SNORA64.4-201ENST00000516632 81 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 SNORD59.2-201ENST00000516873 68 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 SCARNA20.6-201ENST00000517251 106 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.41□□□□□ -1.86
HDAC4P56524 HMGB1P41-201ENST00000520234 440 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.41□□□□□ -1.86
HDAC4P56524 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.41□□□□□ -1.86
HDAC4P56524 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.41□□□□□ -1.86
HDAC4P56524 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.41□□□□□ -1.86
HDAC4P56524 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.41□□□□□ -1.86
HDAC4P56524 ZNF519P2-201ENST00000557032 169 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.41□□□□□ -1.86
HDAC4P56524 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.41□□□□□ -1.86
HDAC4P56524 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.41□□□□□ -1.86
HDAC4P56524 AL670379.6-201ENST00000603753 252 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 AL670379.11-201ENST00000604059 253 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 AC008162.1-201ENST00000604718 254 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 AL670379.1-201ENST00000604752 252 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 AL670379.5-201ENST00000605253 252 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 AL670379.12-201ENST00000605291 253 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 AL670379.8-201ENST00000605353 252 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 AL670379.7-201ENST00000605823 252 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 AC009161.2-201ENST00000624626 138 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HDAC4P56524 AC004944.1-201ENST00000517807 3059 ntBASIC3.41□□□□□ -1.86
HDAC4P56524 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
HDAC4P56524 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HDAC4P56524 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.4□□□□□ -1.86
HDAC4P56524 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.4□□□□□ -1.86
HDAC4P56524 RNU6-188P-201ENST00000364207 107 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 Y_RNA.381-201ENST00000365666 102 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HDAC4P56524 RPS4XP8-201ENST00000402039 771 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 AL354719.1-201ENST00000406535 843 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 RN7SKP140-201ENST00000411196 284 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.4□□□□□ -1.87
HDAC4P56524 AC063979.1-201ENST00000415539 377 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 MTATP6P18-201ENST00000417994 673 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.4□□□□□ -1.87
HDAC4P56524 AL451054.2-201ENST00000420896 202 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.4□□□□□ -1.87
HDAC4P56524 RAC1P6-201ENST00000423911 575 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 USP9YP18-201ENST00000425912 695 ntBASIC3.4□□□□□ -1.87
HDAC4P56524 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms