Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 YME1L1P1-201ENST00000429435 297 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 HMGB1P27-201ENST00000431429 603 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 TAAR7P-201ENST00000436141 242 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC3.4□□□□□ -1.87
PTPN9P43378 AC016691.1-201ENST00000441321 413 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 RPS4XP22-201ENST00000480755 780 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.4□□□□□ -1.87
PTPN9P43378 SCARNA20.6-201ENST00000517251 106 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.4□□□□□ -1.87
PTPN9P43378 AC104027.1-201ENST00000521887 300 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.4□□□□□ -1.87
PTPN9P43378 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.4□□□□□ -1.87
PTPN9P43378 SYF2P1-201ENST00000550658 413 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.4□□□□□ -1.87
PTPN9P43378 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.4□□□□□ -1.87
PTPN9P43378 AC007619.2-201ENST00000605743 379 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 AP001596.2-201ENST00000608410 312 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
PTPN9P43378 AC025034.2-201ENST00000623264 286 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 AC004972.1-201ENST00000623934 2209 ntBASIC3.4□□□□□ -1.87
PTPN9P43378 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.87
PTPN9P43378 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
PTPN9P43378 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.4□□□□□ -1.87
PTPN9P43378 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.39□□□□□ -1.87
PTPN9P43378 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PTPN9P43378 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
PTPN9P43378 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PTPN9P43378 RNA5SP295-201ENST00000362655 121 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PTPN9P43378 RNA5SP171-201ENST00000391071 115 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.39□□□□□ -1.87
PTPN9P43378 USP9YP27-201ENST00000418455 438 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.39□□□□□ -1.87
PTPN9P43378 NEK4P1-201ENST00000433383 879 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.39□□□□□ -1.87
PTPN9P43378 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.39□□□□□ -1.87
PTPN9P43378 RNU6-420P-201ENST00000458780 107 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 RN7SL442P-201ENST00000473804 320 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.39□□□□□ -1.87
PTPN9P43378 HMGB3P15-201ENST00000507326 574 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 AC098591.2-201ENST00000510152 315 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 AC108078.2-201ENST00000510750 236 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 RNU6-1256P-201ENST00000516539 103 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 RNU6-677P-201ENST00000516914 101 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 AP001804.3-201ENST00000525146 880 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 OR5B19P-201ENST00000531766 928 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.39□□□□□ -1.87
PTPN9P43378 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC3.39□□□□□ -1.87
PTPN9P43378 MIR4801-201ENST00000582704 82 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 AC002545.1-201ENST00000592511 181 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 AL162713.1-201ENST00000604480 262 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 AC104458.1-201ENST00000608243 463 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 AC007014.2-201ENST00000615581 479 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 AC084757.4-201ENST00000616350 526 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 PLCE1P1-201ENST00000622094 305 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.39□□□□□ -1.87
PTPN9P43378 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.39□□□□□ -1.87
PTPN9P43378 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.39□□□□□ -1.87
PTPN9P43378 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.39□□□□□ -1.87
PTPN9P43378 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.39□□□□□ -1.87
PTPN9P43378 AC006020.1-201ENST00000420179 1854 ntBASIC3.39□□□□□ -1.87
PTPN9P43378 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PTPN9P43378 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PTPN9P43378 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.39□□□□□ -1.87
PTPN9P43378 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
PTPN9P43378 CKAP2P1-201ENST00000555477 2049 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 Y_RNA.248-201ENST00000364501 109 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.38□□□□□ -1.87
PTPN9P43378 RNU6-483P-201ENST00000384088 108 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 SNORD115-47-201ENST00000391226 86 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 AC068050.1-201ENST00000394891 380 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 U3.42-201ENST00000408746 214 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 AC114491.1-201ENST00000416095 246 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.38□□□□□ -1.87
PTPN9P43378 MTCO1P20-201ENST00000425366 358 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 AL606489.2-201ENST00000433886 234 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 NDUFB4P6-201ENST00000436819 366 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 SEPT14P3-201ENST00000439401 183 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 CALM1P1-201ENST00000442082 433 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 AC009237.8-201ENST00000445492 379 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 AL732372.2-207ENST00000445840 183 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.38□□□□□ -1.87
PTPN9P43378 ELOCP23-201ENST00000452014 332 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 SEPT14P2-201ENST00000453405 183 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 AC091153.1-201ENST00000466297 402 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 RPL31P60-201ENST00000478450 367 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 RPL30P5-201ENST00000494923 336 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 AC110794.1-201ENST00000505816 425 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 SEPT14P4-201ENST00000513445 186 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 RNU6-718P-201ENST00000516166 105 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 RNU6-1281P-201ENST00000516223 105 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 RNU6-835P-201ENST00000516974 104 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 RNU6-685P-201ENST00000517088 95 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.38□□□□□ -1.87
PTPN9P43378 FO082796.1-201ENST00000523795 183 ntBASIC3.38□□□□□ -1.87
PTPN9P43378 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
PTPN9P43378 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.38□□□□□ -1.87
PTPN9P43378 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.38□□□□□ -1.87
PTPN9P43378 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 124.2 ms