Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
SCN4AP35499 AL359273.1-201ENST00000510918 627 ntBASIC2.07□□□□□ -2.08
SCN4AP35499 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
SCN4AP35499 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.07□□□□□ -2.08
SCN4AP35499 SETP7-201ENST00000552169 453 ntBASIC2.07□□□□□ -2.08
SCN4AP35499 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.07□□□□□ -2.08
SCN4AP35499 AC023813.2-201ENST00000564321 469 ntBASIC2.07□□□□□ -2.08
SCN4AP35499 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.07□□□□□ -2.08
SCN4AP35499 AC105224.1-201ENST00000587055 421 ntBASIC2.07□□□□□ -2.08
SCN4AP35499 MTCO2P2-201ENST00000591258 225 ntBASIC2.07□□□□□ -2.08
SCN4AP35499 MTND4P23-201ENST00000447723 1363 ntBASIC2.07□□□□□ -2.08
SCN4AP35499 DDX43P2-201ENST00000604753 1354 ntBASIC2.07□□□□□ -2.08
SCN4AP35499 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.07□□□□□ -2.08
SCN4AP35499 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
SCN4AP35499 SLC10A5P1-201ENST00000379063 1306 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 AL513185.3-201ENST00000433335 1300 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 MAPK10-266ENST00000641066 6555 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 HSPE1P11-201ENST00000339579 310 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 DEFB108F-201ENST00000344638 222 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.06□□□□□ -2.08
SCN4AP35499 Y_RNA.192-201ENST00000363977 102 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC2.06□□□□□ -2.08
SCN4AP35499 RNU6-1074P-201ENST00000383995 104 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 RNU6-1027P-201ENST00000383998 107 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.06□□□□□ -2.08
SCN4AP35499 CR769776.1-201ENST00000441254 787 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 RPL17P49-201ENST00000443728 411 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.06□□□□□ -2.08
SCN4AP35499 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC2.06□□□□□ -2.08
SCN4AP35499 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC2.06□□□□□ -2.08
SCN4AP35499 MEMO1P3-201ENST00000459811 302 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 RPS15AP17-201ENST00000470598 390 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 AL121594.1-201ENST00000475906 575 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 AC090096.1-201ENST00000489168 390 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC2.06□□□□□ -2.08
SCN4AP35499 AC105914.1-201ENST00000511798 226 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 RAC1P5-201ENST00000512182 576 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 AC093677.1-201ENST00000514414 678 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 MTND2P32-201ENST00000521584 1038 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 DEFB108D-201ENST00000527787 222 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 SYF2P1-201ENST00000550658 413 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC2.06□□□□□ -2.08
SCN4AP35499 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.06□□□□□ -2.08
SCN4AP35499 AC022662.1-201ENST00000580252 331 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 AL158211.4-201ENST00000606988 584 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 AC144521.1-201ENST00000607148 956 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 AC024560.3-201ENST00000608482 349 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 RMST_6.1-201ENST00000611980 203 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 AC006213.4-201ENST00000616184 634 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 AC011330.2-201ENST00000621680 635 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 AC090740.1-201ENST00000623193 2262 ntBASIC2.06□□□□□ -2.08
SCN4AP35499 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SCN4AP35499 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC2.06□□□□□ -2.08
SCN4AP35499 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.06□□□□□ -2.08
SCN4AP35499 SNORA7.1-201ENST00000363750 139 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 Z98749.2-208ENST00000381646 500 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 Y_RNA.548-201ENST00000384656 105 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 AC016769.3-201ENST00000396562 315 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 LSM1P1-201ENST00000438629 273 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 Z96811.1-201ENST00000445880 108 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC2.05□□□□□ -2.08
SCN4AP35499 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC2.05□□□□□ -2.08
SCN4AP35499 RNU6-583P-201ENST00000516012 92 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 SNORA48.10-201ENST00000516965 160 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
SCN4AP35499 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC2.05□□□□□ -2.08
SCN4AP35499 AC006270.3-201ENST00000605967 1036 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 AC008083.4-201ENST00000615076 444 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC2.05□□□□□ -2.08
SCN4AP35499 AC022960.3-201ENST00000619794 441 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 AC090772.4-201ENST00000623599 362 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 MIR4275-201ENST00000636486 87 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
SCN4AP35499 RNU6-1180P-201ENST00000364935 107 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 Y_RNA.327-201ENST00000365201 102 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 RNU6-53P-201ENST00000365367 106 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 Y_RNA.465-201ENST00000384293 102 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
SCN4AP35499 MTATP6P27-201ENST00000416987 621 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC2.05□□□□□ -2.08
SCN4AP35499 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.05□□□□□ -2.08
SCN4AP35499 AL451074.3-201ENST00000437709 472 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
SCN4AP35499 ARPC3P5-201ENST00000448802 534 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.05□□□□□ -2.08
SCN4AP35499 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC2.05□□□□□ -2.08
SCN4AP35499 RBM43P1-201ENST00000476891 1081 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC2.05□□□□□ -2.08
SCN4AP35499 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.05□□□□□ -2.08
SCN4AP35499 AC024589.1-201ENST00000512207 263 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC2.05□□□□□ -2.08
SCN4AP35499 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC2.05□□□□□ -2.08
SCN4AP35499 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC2.05□□□□□ -2.08
SCN4AP35499 AL049838.1-201ENST00000563647 981 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 AL645939.4-201ENST00000604495 135 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 AC016597.2-201ENST00000613256 341 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 MIR6130-201ENST00000619419 109 ntBASIC2.05□□□□□ -2.08
SCN4AP35499 OR4G11P-202ENST00000642116 1414 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 129.2 ms