Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC107626.1-201ENST00000471084 183 ntBASIC0.81□□□□□ -2.28
HMGA1P17096 FAM206BP-201ENST00000510179 541 ntBASIC0.81□□□□□ -2.28
HMGA1P17096 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC0.81□□□□□ -2.28
HMGA1P17096 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC0.81□□□□□ -2.28
HMGA1P17096 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC0.81□□□□□ -2.28
HMGA1P17096 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC0.81□□□□□ -2.28
HMGA1P17096 AL136313.1-201ENST00000624804 202 ntBASIC0.81□□□□□ -2.28
HMGA1P17096 AC009541.1-201ENST00000438279 2662 ntBASIC0.81□□□□□ -2.28
HMGA1P17096 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
HMGA1P17096 AC092047.1-201ENST00000424997 240 ntBASIC0.8□□□□□ -2.28
HMGA1P17096 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC0.8□□□□□ -2.28
HMGA1P17096 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC0.8□□□□□ -2.28
HMGA1P17096 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC0.8□□□□□ -2.28
HMGA1P17096 AC079448.1-201ENST00000449377 373 ntBASIC0.8□□□□□ -2.28
HMGA1P17096 MTND4LP3-201ENST00000468320 276 ntBASIC0.8□□□□□ -2.28
HMGA1P17096 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
HMGA1P17096 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC0.8□□□□□ -2.28
HMGA1P17096 RNA5SP165-201ENST00000517142 115 ntBASIC0.8□□□□□ -2.28
HMGA1P17096 MIR4714-201ENST00000580728 77 ntBASIC0.8□□□□□ -2.28
HMGA1P17096 PVT1_3.1-201ENST00000620853 95 ntBASIC0.8□□□□□ -2.28
HMGA1P17096 AP006248.3-201ENST00000623580 594 ntBASIC0.8□□□□□ -2.28
HMGA1P17096 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC0.8□□□□□ -2.28
HMGA1P17096 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC0.8□□□□□ -2.28
HMGA1P17096 ICE2P2-201ENST00000483823 2787 ntBASIC0.8□□□□□ -2.28
HMGA1P17096 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
HMGA1P17096 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
HMGA1P17096 AC010329.5-201ENST00000623497 2174 ntBASIC0.79□□□□□ -2.28
HMGA1P17096 RNU1-72P-201ENST00000362976 153 ntBASIC0.79□□□□□ -2.28
HMGA1P17096 RNU6-1328P-201ENST00000410938 106 ntBASIC0.79□□□□□ -2.28
HMGA1P17096 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.79□□□□□ -2.28
HMGA1P17096 TRBV25OR9-2-201ENST00000438417 374 ntBASIC0.79□□□□□ -2.28
HMGA1P17096 ARL5AP3-201ENST00000439327 386 ntBASIC0.79□□□□□ -2.28
HMGA1P17096 KATNBL1P3-201ENST00000443475 909 ntBASIC0.79□□□□□ -2.28
HMGA1P17096 AC005908.1-201ENST00000468701 347 ntBASIC0.79□□□□□ -2.28
HMGA1P17096 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC0.79□□□□□ -2.28
HMGA1P17096 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC0.79□□□□□ -2.28
HMGA1P17096 SNORA48.11-201ENST00000517015 89 ntBASIC0.79□□□□□ -2.28
HMGA1P17096 AP003497.1-201ENST00000528472 562 ntBASIC0.79□□□□□ -2.28
HMGA1P17096 NTS-203ENST00000551529 801 ntTSL 3 BASIC0.79□□□□□ -2.28
HMGA1P17096 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC0.79□□□□□ -2.28
HMGA1P17096 AP003400.5-201ENST00000624827 617 ntBASIC0.79□□□□□ -2.28
HMGA1P17096 AC097372.4-201ENST00000625025 466 ntBASIC0.79□□□□□ -2.28
HMGA1P17096 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC0.79□□□□□ -2.28
HMGA1P17096 LINC02211-204ENST00000642024 1070 ntBASIC0.79□□□□□ -2.28
HMGA1P17096 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
HMGA1P17096 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC0.78□□□□□ -2.28
HMGA1P17096 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
HMGA1P17096 RNU1-133P-201ENST00000364867 167 ntBASIC0.78□□□□□ -2.28
HMGA1P17096 RNU1-139P-201ENST00000391307 165 ntBASIC0.78□□□□□ -2.28
HMGA1P17096 OFD1P12Y-201ENST00000427963 1207 ntBASIC0.78□□□□□ -2.28
HMGA1P17096 EZH2P1-201ENST00000431167 291 ntBASIC0.78□□□□□ -2.28
HMGA1P17096 AC092573.2-201ENST00000434546 243 ntBASIC0.78□□□□□ -2.28
HMGA1P17096 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC0.78□□□□□ -2.28
HMGA1P17096 TPTE2P6-202ENST00000445572 1007 ntBASIC0.78□□□□□ -2.28
HMGA1P17096 TPRKBP1-201ENST00000456243 481 ntBASIC0.78□□□□□ -2.28
HMGA1P17096 OR2A41P-201ENST00000473586 105 ntBASIC0.78□□□□□ -2.28
HMGA1P17096 RPS27P23-201ENST00000487608 251 ntBASIC0.78□□□□□ -2.28
HMGA1P17096 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.78□□□□□ -2.28
HMGA1P17096 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC0.78□□□□□ -2.28
HMGA1P17096 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC0.78□□□□□ -2.28
HMGA1P17096 HMGB1P14-201ENST00000557424 591 ntBASIC0.78□□□□□ -2.28
HMGA1P17096 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC0.78□□□□□ -2.28
HMGA1P17096 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC0.78□□□□□ -2.28
HMGA1P17096 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.78□□□□□ -2.28
HMGA1P17096 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC0.78□□□□□ -2.28
HMGA1P17096 DEFB108F-201ENST00000344638 222 ntBASIC0.77□□□□□ -2.29
HMGA1P17096 RNU6-697P-201ENST00000363348 107 ntBASIC0.77□□□□□ -2.29
HMGA1P17096 RNU6-17P-201ENST00000384245 107 ntBASIC0.77□□□□□ -2.29
HMGA1P17096 RNU6-18P-201ENST00000384527 107 ntBASIC0.77□□□□□ -2.29
HMGA1P17096 TATDN1P1-201ENST00000414123 891 ntBASIC0.77□□□□□ -2.29
HMGA1P17096 CBX3P6-201ENST00000430257 527 ntBASIC0.77□□□□□ -2.29
HMGA1P17096 AL591212.2-201ENST00000433923 257 ntBASIC0.77□□□□□ -2.29
HMGA1P17096 AC092393.1-201ENST00000439625 742 ntBASIC0.77□□□□□ -2.29
HMGA1P17096 OR52A4P-202ENST00000481634 799 ntBASIC0.77□□□□□ -2.29
HMGA1P17096 AC114801.2-201ENST00000503825 781 ntBASIC0.77□□□□□ -2.29
HMGA1P17096 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC0.77□□□□□ -2.29
HMGA1P17096 SNORA44.1-201ENST00000517031 108 ntBASIC0.77□□□□□ -2.29
HMGA1P17096 SCARNA11.3-201ENST00000517276 130 ntBASIC0.77□□□□□ -2.29
HMGA1P17096 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.77□□□□□ -2.29
HMGA1P17096 AC025423.2-201ENST00000537570 439 ntBASIC0.77□□□□□ -2.29
HMGA1P17096 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC0.77□□□□□ -2.29
HMGA1P17096 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC0.77□□□□□ -2.29
HMGA1P17096 AL078605.1-201ENST00000603529 500 ntBASIC0.77□□□□□ -2.29
HMGA1P17096 MIR6835-201ENST00000621552 64 ntBASIC0.77□□□□□ -2.29
HMGA1P17096 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.77□□□□□ -2.29
HMGA1P17096 AP000776.1-201ENST00000530032 1663 ntBASIC0.77□□□□□ -2.29
HMGA1P17096 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC0.76□□□□□ -2.29
HMGA1P17096 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC0.76□□□□□ -2.29
HMGA1P17096 Y_RNA.40-201ENST00000362645 93 ntBASIC0.76□□□□□ -2.29
HMGA1P17096 Y_RNA.112-201ENST00000363250 102 ntBASIC0.76□□□□□ -2.29
HMGA1P17096 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
HMGA1P17096 GTF2IP20-201ENST00000431663 360 ntBASIC0.76□□□□□ -2.29
HMGA1P17096 TRIM60P13-201ENST00000432350 1283 ntBASIC0.76□□□□□ -2.29
HMGA1P17096 AC241584.1-201ENST00000438469 1241 ntBASIC0.76□□□□□ -2.29
HMGA1P17096 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC0.76□□□□□ -2.29
HMGA1P17096 RNU7-23P-201ENST00000459465 62 ntBASIC0.76□□□□□ -2.29
HMGA1P17096 AC092991.1-201ENST00000477176 376 ntBASIC0.76□□□□□ -2.29
HMGA1P17096 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
HMGA1P17096 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
HMGA1P17096 AC103851.1-201ENST00000506833 274 ntBASIC0.76□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms