Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 USP8P1-201ENST00000494673 3183 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 RNU6-38P-201ENST00000384085 107 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 RNU6-767P-201ENST00000384132 107 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 MIR514A2-201ENST00000385131 88 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 MIR514A3-201ENST00000385132 88 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 AL590704.1-201ENST00000402856 794 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 MIR1193-201ENST00000408109 78 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 RNU2-41P-201ENST00000410991 178 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 RN7SKP263-201ENST00000411194 309 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 RPL23AP82-202ENST00000427528 469 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 AC006539.3-201ENST00000454258 129 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 RNU6-333P-201ENST00000459117 107 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 AC087588.1-201ENST00000462203 316 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 CENPBD1P1-201ENST00000464061 469 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 RPL21P99-201ENST00000480369 423 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 SCARNA15.2-201ENST00000516409 127 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 RNU6-875P-201ENST00000516488 106 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 AC107934.2-201ENST00000518653 310 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 MDM2-233ENST00000545204 398 ntTSL 5 BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 AL020997.2-201ENST00000602607 184 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 AC007619.2-201ENST00000605743 379 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 AC006023.2-201ENST00000609916 167 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 uc_338.34-201ENST00000617467 174 ntBASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
LIMCH1Q9UPQ0 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 RNU1-75P-201ENST00000347264 129 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 RNU4-66P-201ENST00000365199 138 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 SNORD6-201ENST00000365444 73 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 RNU6-14P-201ENST00000384630 106 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 RNU6-550P-201ENST00000391057 101 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 RPL21P17-201ENST00000397467 475 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 RNU4-26P-201ENST00000410270 107 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 RNA5SP31-201ENST00000411144 127 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 RNU2-71P-201ENST00000411395 189 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 EEF1A1P40-201ENST00000412883 573 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 CYCSP4-201ENST00000429682 331 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 AL591704.1-201ENST00000432574 275 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 SNRPEP8-201ENST00000442866 260 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 MTND1P11-201ENST00000456661 876 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 AC091951.2-201ENST00000500762 203 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 Y_RNA.689-201ENST00000516589 107 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 ATP5F1P5-201ENST00000526403 760 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 AC078814.3-201ENST00000553036 491 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 VN1R85P-201ENST00000601587 426 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 RNU6-89P-201ENST00000606519 100 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 AC034102.8-201ENST00000615146 484 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 AC100810.6-201ENST00000638068 285 ntBASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
LIMCH1Q9UPQ0 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 Y_RNA.100-201ENST00000363141 102 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 RNU6-510P-201ENST00000391239 108 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 AL162578.1-201ENST00000406202 378 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 Z99755.1-201ENST00000414048 380 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 AC080125.1-201ENST00000414888 684 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 AL356968.1-201ENST00000416622 474 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 NDUFB4P7-201ENST00000423198 363 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 AL590383.1-201ENST00000428602 75 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 VDAC1P3-201ENST00000434069 851 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 MTND4LP16-201ENST00000440828 295 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 AC008264.1-201ENST00000447612 367 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 PRDX3P3-201ENST00000447765 522 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 RPL37P6-201ENST00000460682 294 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 HMGN2P26-201ENST00000463169 339 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 RPS4XP22-201ENST00000480755 780 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 AL049874.1-201ENST00000489560 388 ntBASIC4.04□□□□□ -1.76
LIMCH1Q9UPQ0 RBBP4P6-201ENST00000508098 202 ntBASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms