Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC130509.1-201ENST00000464158 433 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 AC096576.1-201ENST00000489014 359 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 HMGB1P30-201ENST00000492455 606 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 AC099522.1-202ENST00000514718 367 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 SNORA31.8-201ENST00000516327 108 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 AP005597.4-201ENST00000526762 229 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 SNRPGP16-201ENST00000533275 226 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 AC005951.2-201ENST00000576282 495 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 AC022655.2-201ENST00000577280 318 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 AC006270.2-201ENST00000578523 652 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 MIR548AC-201ENST00000585049 88 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 AC020910.2-201ENST00000603635 610 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 ATP1B3P1-201ENST00000605365 821 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 AC098657.3-201ENST00000620434 263 ntBASIC3.68□□□□□ -1.82
VSX1Q9NZR4 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
VSX1Q9NZR4 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 AC018555.1-201ENST00000567548 1980 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 RNU6-1252P-201ENST00000363054 104 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 RNA5SP509-201ENST00000364577 119 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 RNA5SP167-201ENST00000365461 116 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 U1.1-201ENST00000384101 164 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 Y_RNA.579-201ENST00000390939 94 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 PTMAP5-201ENST00000393073 333 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 RNU4-25P-201ENST00000410569 230 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 RNU6-293P-201ENST00000411259 106 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 AC011933.1-201ENST00000413334 321 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 AC068287.1-201ENST00000430283 295 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 AL359672.1-201ENST00000442302 409 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 Y_RNA.653-201ENST00000459091 95 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 Y_RNA.631-201ENST00000459607 101 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 MTND4P17-201ENST00000470444 350 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 AL049830.2-201ENST00000480072 201 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 RPS26P15-201ENST00000488067 348 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 AF213884.1-201ENST00000488102 463 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 AC008716.1-201ENST00000511084 513 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 RNU7-143P-201ENST00000516781 65 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 AP005639.2-201ENST00000527592 928 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 AL163153.1-201ENST00000554223 283 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 TVP23BP1-201ENST00000557500 617 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 MED28P6-201ENST00000558776 231 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 MIR4700-201ENST00000578311 74 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 MIR1273C-201ENST00000578669 77 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 MIR5096-201ENST00000583713 70 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 AC080078.3-201ENST00000605407 463 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 MIR6748-201ENST00000610433 71 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 ATP5A1P2-202ENST00000616464 443 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 AC011944.2-201ENST00000624440 683 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 MTND5P10-201ENST00000603719 1809 ntBASIC3.67□□□□□ -1.82
VSX1Q9NZR4 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
VSX1Q9NZR4 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VSX1Q9NZR4 MAPK10-253ENST00000641010 4072 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.66□□□□□ -1.82
VSX1Q9NZR4 AC005183.1-201ENST00000603687 1979 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VSX1Q9NZR4 UBE2L2-201ENST00000254302 429 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VSX1Q9NZR4 RNU1-32P-201ENST00000363937 159 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 RNA5SP366-201ENST00000365454 123 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.66□□□□□ -1.82
VSX1Q9NZR4 Y_RNA.395-201ENST00000383945 109 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 AL139039.1-201ENST00000401900 692 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 Z98941.1-201ENST00000407764 100 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.66□□□□□ -1.82
VSX1Q9NZR4 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.66□□□□□ -1.82
VSX1Q9NZR4 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.66□□□□□ -1.82
VSX1Q9NZR4 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC3.66□□□□□ -1.82
VSX1Q9NZR4 AL645568.3-201ENST00000433683 316 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 AC073063.1-201ENST00000434352 607 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.66□□□□□ -1.82
VSX1Q9NZR4 AC006011.1-201ENST00000442758 349 ntBASIC3.66□□□□□ -1.82
VSX1Q9NZR4 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.66□□□□□ -1.82
VSX1Q9NZR4 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 142.3 ms