Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
TREX1Q9NSU2 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.06□□□□□ -2.08
TREX1Q9NSU2 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
TREX1Q9NSU2 RNU6-220P-201ENST00000390919 107 ntBASIC2.05□□□□□ -2.08
TREX1Q9NSU2 AL590084.2-201ENST00000401481 382 ntBASIC2.05□□□□□ -2.08
TREX1Q9NSU2 AC023141.4-201ENST00000412031 328 ntBASIC2.05□□□□□ -2.08
TREX1Q9NSU2 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.05□□□□□ -2.08
TREX1Q9NSU2 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC2.05□□□□□ -2.08
TREX1Q9NSU2 AL139413.1-201ENST00000421309 217 ntBASIC2.05□□□□□ -2.08
TREX1Q9NSU2 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.05□□□□□ -2.08
TREX1Q9NSU2 USP9YP11-201ENST00000427537 717 ntBASIC2.05□□□□□ -2.08
TREX1Q9NSU2 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.05□□□□□ -2.08
TREX1Q9NSU2 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.05□□□□□ -2.08
TREX1Q9NSU2 OSTCP8-201ENST00000445117 448 ntBASIC2.05□□□□□ -2.08
TREX1Q9NSU2 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.05□□□□□ -2.08
TREX1Q9NSU2 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.05□□□□□ -2.08
TREX1Q9NSU2 AC109445.1-201ENST00000512356 383 ntBASIC2.05□□□□□ -2.08
TREX1Q9NSU2 MIR514B-201ENST00000516774 80 ntBASIC2.05□□□□□ -2.08
TREX1Q9NSU2 RNA5SP290-201ENST00000517133 127 ntBASIC2.05□□□□□ -2.08
TREX1Q9NSU2 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC2.05□□□□□ -2.08
TREX1Q9NSU2 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.05□□□□□ -2.08
TREX1Q9NSU2 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.05□□□□□ -2.08
TREX1Q9NSU2 YWHAZP1-201ENST00000556286 722 ntBASIC2.05□□□□□ -2.08
TREX1Q9NSU2 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.05□□□□□ -2.08
TREX1Q9NSU2 AC009314.1-201ENST00000603871 304 ntBASIC2.05□□□□□ -2.08
TREX1Q9NSU2 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC2.05□□□□□ -2.08
TREX1Q9NSU2 AC090186.1-201ENST00000605991 572 ntBASIC2.05□□□□□ -2.08
TREX1Q9NSU2 AC092574.1-201ENST00000609771 420 ntBASIC2.05□□□□□ -2.08
TREX1Q9NSU2 AL590808.1-201ENST00000618696 141 ntBASIC2.05□□□□□ -2.08
TREX1Q9NSU2 AL121895.2-201ENST00000619558 447 ntBASIC2.05□□□□□ -2.08
TREX1Q9NSU2 AC011477.1-204ENST00000623416 1325 ntBASIC2.05□□□□□ -2.08
TREX1Q9NSU2 AC092447.10-201ENST00000620607 1652 ntBASIC2.05□□□□□ -2.08
TREX1Q9NSU2 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
TREX1Q9NSU2 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 FAM133CP-201ENST00000332869 704 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 RNU6-223P-201ENST00000362830 107 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 RNU6-853P-201ENST00000364306 107 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 RNU6-1083P-201ENST00000384022 107 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 SNORA64-201ENST00000384674 134 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 MIR888-201ENST00000401186 77 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 SNORA3.2-201ENST00000408221 125 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AL135786.1-201ENST00000415892 214 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 RPL32P28-201ENST00000443577 397 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 EEF1E1P1-201ENST00000446998 430 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AL160314.1-201ENST00000490836 438 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AC008549.1-201ENST00000512900 643 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 RNU1-40P-201ENST00000516816 164 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 RNU1-97P-201ENST00000516872 164 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AL138976.2-201ENST00000563989 694 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 MIR5571-201ENST00000577998 113 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AC025165.5-201ENST00000602802 578 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AC116312.1-201ENST00000606841 314 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AC109809.1-201ENST00000619665 545 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 AC010149.2-201ENST00000637608 315 ntBASIC2.04□□□□□ -2.08
TREX1Q9NSU2 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
TREX1Q9NSU2 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
TREX1Q9NSU2 RNU6-777P-201ENST00000364265 104 ntBASIC2.03□□□□□ -2.08
TREX1Q9NSU2 MIR320C1-201ENST00000408566 88 ntBASIC2.03□□□□□ -2.08
TREX1Q9NSU2 RN7SKP223-201ENST00000410582 62 ntBASIC2.03□□□□□ -2.08
TREX1Q9NSU2 HMGB3P2-201ENST00000411913 584 ntBASIC2.03□□□□□ -2.08
TREX1Q9NSU2 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
TREX1Q9NSU2 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.03□□□□□ -2.08
TREX1Q9NSU2 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.03□□□□□ -2.08
TREX1Q9NSU2 CYCSP48-201ENST00000417124 323 ntBASIC2.03□□□□□ -2.08
TREX1Q9NSU2 MTCYBP38-201ENST00000417160 1123 ntBASIC2.03□□□□□ -2.08
TREX1Q9NSU2 USP9YP13-201ENST00000417797 480 ntBASIC2.03□□□□□ -2.08
TREX1Q9NSU2 Z98742.3-201ENST00000418637 326 ntBASIC2.03□□□□□ -2.08
TREX1Q9NSU2 HMGB1P9-201ENST00000429856 646 ntBASIC2.03□□□□□ -2.08
TREX1Q9NSU2 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.03□□□□□ -2.08
TREX1Q9NSU2 MTCO1P53-201ENST00000441633 699 ntBASIC2.03□□□□□ -2.08
TREX1Q9NSU2 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC2.03□□□□□ -2.08
TREX1Q9NSU2 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC2.03□□□□□ -2.08
TREX1Q9NSU2 AC072039.1-201ENST00000477611 581 ntBASIC2.03□□□□□ -2.08
TREX1Q9NSU2 RPL9P6-201ENST00000492764 598 ntBASIC2.03□□□□□ -2.08
TREX1Q9NSU2 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.03□□□□□ -2.08
TREX1Q9NSU2 AC079395.1-201ENST00000510981 262 ntBASIC2.03□□□□□ -2.08
TREX1Q9NSU2 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.03□□□□□ -2.08
TREX1Q9NSU2 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.03□□□□□ -2.08
TREX1Q9NSU2 AC060771.1-201ENST00000582031 164 ntBASIC2.03□□□□□ -2.08
TREX1Q9NSU2 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.03□□□□□ -2.08
TREX1Q9NSU2 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC2.03□□□□□ -2.08
TREX1Q9NSU2 AC103710.1-201ENST00000610003 901 ntBASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms