Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC140076.1-201ENST00000449897 361 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 FGF7P6-202ENST00000451282 293 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.01□□□□□ -1.93
SIX2Q9NPC8 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.01□□□□□ -1.93
SIX2Q9NPC8 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.01□□□□□ -1.93
SIX2Q9NPC8 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.01□□□□□ -1.93
SIX2Q9NPC8 AC079382.1-201ENST00000493346 557 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.01□□□□□ -1.93
SIX2Q9NPC8 MLLT10P2-201ENST00000506434 249 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 RNU6-718P-201ENST00000516166 105 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 RNU2-10P-201ENST00000516375 211 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.01□□□□□ -1.93
SIX2Q9NPC8 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
SIX2Q9NPC8 AP003034.1-201ENST00000534621 422 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 AK6P1-201ENST00000540219 478 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 ARL2BPP2-201ENST00000550907 489 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 HMGB1P33-201ENST00000563485 527 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 FAM60BP-201ENST00000578364 658 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 MIR4801-201ENST00000582704 82 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 MIR4325-201ENST00000583049 90 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 AC006504.3-201ENST00000586818 523 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 AC012443.1-201ENST00000605605 231 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.01□□□□□ -1.93
SIX2Q9NPC8 AC004696.1-201ENST00000614345 607 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 SNHG22-203ENST00000617833 660 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 AL713922.2-201ENST00000619384 716 ntBASIC3.01□□□□□ -1.93
SIX2Q9NPC8 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC3.01□□□□□ -1.93
SIX2Q9NPC8 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
SIX2Q9NPC8 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC3.01□□□□□ -1.93
SIX2Q9NPC8 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
SIX2Q9NPC8 AC073346.2-201ENST00000624724 2058 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3□□□□□ -1.93
SIX2Q9NPC8 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3□□□□□ -1.93
SIX2Q9NPC8 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3□□□□□ -1.93
SIX2Q9NPC8 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3□□□□□ -1.93
SIX2Q9NPC8 Y_RNA.22-201ENST00000362492 102 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 RNU4-12P-201ENST00000365233 139 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 RNU1-39P-201ENST00000383897 165 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 AL136372.1-201ENST00000403060 228 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 AL359634.1-202ENST00000404721 284 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 BTF3P7-201ENST00000407097 488 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 RNU2-36P-201ENST00000410361 191 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 EEF1A1P41-201ENST00000414667 207 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 AL353193.1-201ENST00000421444 268 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3□□□□□ -1.93
SIX2Q9NPC8 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3□□□□□ -1.93
SIX2Q9NPC8 AL451062.2-201ENST00000427515 271 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 RPL21P112-201ENST00000434403 463 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 RPS15AP9-201ENST00000439856 381 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 AC079781.2-201ENST00000446424 169 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 SNRPGP6-201ENST00000451124 220 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3□□□□□ -1.93
SIX2Q9NPC8 MTND2P24-201ENST00000453434 806 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 S100A11P2-201ENST00000467589 312 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 AL121769.1-201ENST00000469473 401 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 RPS27AP1-201ENST00000475545 471 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 RN7SL297P-201ENST00000483161 293 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 AC105914.1-201ENST00000511798 226 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3□□□□□ -1.93
SIX2Q9NPC8 SNORA74D-201ENST00000516404 141 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 RNU7-51P-201ENST00000516560 62 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 RNU6-410P-201ENST00000517006 107 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC3□□□□□ -1.93
SIX2Q9NPC8 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3□□□□□ -1.93
SIX2Q9NPC8 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC3□□□□□ -1.93
SIX2Q9NPC8 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3□□□□□ -1.93
SIX2Q9NPC8 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3□□□□□ -1.93
SIX2Q9NPC8 AL355836.1-201ENST00000555951 870 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3□□□□□ -1.93
SIX2Q9NPC8 MIR3605-201ENST00000583214 100 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 AC098848.2-201ENST00000588023 330 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 AC012507.3-201ENST00000603556 477 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 RBM11P1-201ENST00000604951 799 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC3□□□□□ -1.93
SIX2Q9NPC8 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3□□□□□ -1.93
SIX2Q9NPC8 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3□□□□□ -1.93
SIX2Q9NPC8 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
SIX2Q9NPC8 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
SIX2Q9NPC8 AL672296.1-201ENST00000427780 2158 ntBASIC3□□□□□ -1.93
SIX2Q9NPC8 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3□□□□□ -1.93
SIX2Q9NPC8 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC2.99□□□□□ -1.93
SIX2Q9NPC8 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
SIX2Q9NPC8 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
SIX2Q9NPC8 Y_RNA.9-201ENST00000362354 101 ntBASIC2.99□□□□□ -1.93
SIX2Q9NPC8 RNU6-173P-201ENST00000364215 104 ntBASIC2.99□□□□□ -1.93
SIX2Q9NPC8 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
SIX2Q9NPC8 RNU6-74P-201ENST00000384235 107 ntBASIC2.99□□□□□ -1.93
SIX2Q9NPC8 MIR558-201ENST00000384920 94 ntBASIC2.99□□□□□ -1.93
SIX2Q9NPC8 SNORD115-47-201ENST00000391226 86 ntBASIC2.99□□□□□ -1.93
SIX2Q9NPC8 SNORD88.1-201ENST00000408684 91 ntBASIC2.99□□□□□ -1.93
SIX2Q9NPC8 AL592148.1-201ENST00000413568 445 ntBASIC2.99□□□□□ -1.93
SIX2Q9NPC8 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.99□□□□□ -1.93
SIX2Q9NPC8 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.99□□□□□ -1.93
SIX2Q9NPC8 MED13P1-201ENST00000428342 171 ntBASIC2.99□□□□□ -1.93
SIX2Q9NPC8 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.99□□□□□ -1.93
SIX2Q9NPC8 AC112220.1-201ENST00000434628 355 ntBASIC2.99□□□□□ -1.93
SIX2Q9NPC8 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.99□□□□□ -1.93
SIX2Q9NPC8 RPL23AP20-201ENST00000447965 421 ntBASIC2.99□□□□□ -1.93
SIX2Q9NPC8 AC010631.1-201ENST00000474150 156 ntBASIC2.99□□□□□ -1.93
SIX2Q9NPC8 AC090525.1-201ENST00000479116 478 ntBASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms