Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 UBE2L2-201ENST00000254302 429 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 SNORA7.2-201ENST00000364446 145 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 RNU6-1303P-201ENST00000364841 107 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 U1.1-201ENST00000384101 164 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 RNU6-45P-201ENST00000384471 107 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 MIR199A2-201ENST00000385289 110 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 SNORA57.1-201ENST00000391227 145 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 MIR450B-201ENST00000401182 78 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 AC074085.1-201ENST00000413598 418 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 RPL7P10-201ENST00000417407 739 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 AL592045.1-201ENST00000429867 352 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 HSPD1P21-201ENST00000436541 245 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 SNORA71B-202ENST00000439232 272 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 AL162388.1-201ENST00000450912 352 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 RPL21P41-201ENST00000459863 264 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 RAC1P2-201ENST00000511164 579 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 AC138761.3-201ENST00000579993 334 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 AC022432.1-201ENST00000595739 310 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 AC073539.2-201ENST00000597113 165 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 AC012119.1-201ENST00000603184 222 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 AL138726.1-201ENST00000614873 333 ntBASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 ZNF519P1-201ENST00000449011 1626 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 Y_RNA.579-201ENST00000390939 94 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 SNORA3.3-201ENST00000408712 125 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 RPL37P10-201ENST00000412884 288 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 BTF3L4P3-201ENST00000418879 476 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 AF228730.2-201ENST00000438784 848 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 MTND1P17-201ENST00000448961 204 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 HMGB3P30-201ENST00000457863 606 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 AC087588.1-201ENST00000462203 316 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 TRBV12-2-201ENST00000489763 344 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 AC104136.1-201ENST00000512969 394 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 RN7SKP24-201ENST00000515888 284 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 SCARNA15.2-201ENST00000516409 127 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 RNU6-1256P-201ENST00000516539 103 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 Y_RNA.718-201ENST00000517110 102 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 RNU6-1073P-201ENST00000517182 106 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 AP003072.1-201ENST00000531740 145 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 HSPE1P5-201ENST00000561489 272 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 AC093249.1-201ENST00000567049 203 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 MIR5685-201ENST00000579080 79 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 MIR3941-201ENST00000582572 103 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 AC098826.3-201ENST00000603823 466 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 Z99571.1-201ENST00000636677 394 ntBASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC4.17□□□□□ -1.74
PCIF1Q9H4Z3 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 AC018555.1-201ENST00000567548 1980 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 RNU6-371P-201ENST00000364283 108 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 RNU6-512P-201ENST00000364438 103 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 Y_RNA.315-201ENST00000365117 102 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 SNORD116-11-201ENST00000383882 92 ntBASIC4.16□□□□□ -1.74
PCIF1Q9H4Z3 MIR578-201ENST00000384828 96 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 127.1 ms