Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AL732372.2-225ENST00000642124 456 ntBASIC4.07□□□□□ -1.76
NUP88Q99567 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.07□□□□□ -1.76
NUP88Q99567 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
NUP88Q99567 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
NUP88Q99567 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.07□□□□□ -1.76
NUP88Q99567 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.06□□□□□ -1.76
NUP88Q99567 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
NUP88Q99567 RNU6-552P-201ENST00000362869 119 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 RNU6-1167P-201ENST00000363227 94 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 RNA5SP42-201ENST00000364278 115 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 RNU6-283P-201ENST00000364788 107 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 RNU6-14P-201ENST00000384630 106 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 MIR325-201ENST00000385260 98 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 AL606923.1-201ENST00000406616 190 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 U3.42-201ENST00000408746 214 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 RNU2-29P-201ENST00000410423 189 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 UBE2Q2P12-201ENST00000414573 204 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 AC080125.1-201ENST00000414888 684 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 OR6C66P-201ENST00000414917 930 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC4.06□□□□□ -1.76
NUP88Q99567 AC005326.1-201ENST00000429197 123 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 TAAR7P-201ENST00000436141 242 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 NDUFB4P6-201ENST00000436819 366 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 AC073415.1-201ENST00000449240 153 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4.06□□□□□ -1.76
NUP88Q99567 SNRPFP3-201ENST00000457792 225 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.06□□□□□ -1.76
NUP88Q99567 TRBV1-201ENST00000476502 284 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC4.06□□□□□ -1.76
NUP88Q99567 AL160314.1-201ENST00000490836 438 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.06□□□□□ -1.76
NUP88Q99567 PCBP2P3-201ENST00000509726 843 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 SNORA31.3-201ENST00000516029 96 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 RNU2-27P-201ENST00000516185 142 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 SNORA74D-201ENST00000516404 141 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 RNA5SP471-201ENST00000516971 106 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 RNU6-835P-201ENST00000516974 104 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.06□□□□□ -1.76
NUP88Q99567 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC4.06□□□□□ -1.76
NUP88Q99567 HIF1AP1-201ENST00000553642 175 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 AC037471.2-201ENST00000564941 598 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 MTCO3P24-201ENST00000572729 782 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 MIR4738-201ENST00000579134 87 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.06□□□□□ -1.76
NUP88Q99567 BNIP3P9-201ENST00000603714 553 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 DISC2.1-201ENST00000612827 205 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 AC002553.4-201ENST00000616896 331 ntBASIC4.06□□□□□ -1.76
NUP88Q99567 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.06□□□□□ -1.76
NUP88Q99567 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
NUP88Q99567 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
NUP88Q99567 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
NUP88Q99567 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
NUP88Q99567 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.06□□□□□ -1.76
NUP88Q99567 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
NUP88Q99567 AC004520.1-201ENST00000608362 1413 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
NUP88Q99567 AF127577.6-201ENST00000623352 2191 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.05□□□□□ -1.76
NUP88Q99567 Z98941.1-201ENST00000407764 100 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC4.05□□□□□ -1.76
NUP88Q99567 RNU6-1068P-201ENST00000410958 103 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC4.05□□□□□ -1.76
NUP88Q99567 DPPA3P1-201ENST00000448050 469 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.05□□□□□ -1.76
NUP88Q99567 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC4.05□□□□□ -1.76
NUP88Q99567 AC087588.1-201ENST00000462203 316 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.05□□□□□ -1.76
NUP88Q99567 RPL7P5-201ENST00000471472 736 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 PRDX4P1-201ENST00000507189 574 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 RN7SKP219-201ENST00000516825 296 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 AC011611.1-201ENST00000552179 197 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.05□□□□□ -1.76
NUP88Q99567 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC4.05□□□□□ -1.76
NUP88Q99567 MIR5195-201ENST00000583555 115 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 AC008521.1-201ENST00000587471 187 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 AC098826.3-201ENST00000603823 466 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 AL138889.2-201ENST00000603883 242 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.05□□□□□ -1.76
NUP88Q99567 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC4.05□□□□□ -1.76
NUP88Q99567 AL110115.1-201ENST00000614396 364 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 WT1-AS_8.1-201ENST00000615200 275 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
NUP88Q99567 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.05□□□□□ -1.76
NUP88Q99567 MIR3651-201ENST00000630427 90 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 AL512643.1-201ENST00000635735 524 ntBASIC4.05□□□□□ -1.76
NUP88Q99567 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
NUP88Q99567 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
NUP88Q99567 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
NUP88Q99567 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.04□□□□□ -1.76
NUP88Q99567 AC007785.2-201ENST00000598627 1916 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 Y_RNA.245-201ENST00000364493 95 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 CD3D-202ENST00000392884 476 ntTSL 2 BASIC4.04□□□□□ -1.76
NUP88Q99567 AL139039.1-201ENST00000401900 692 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 FAT1P1-201ENST00000406588 507 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 AL591034.1-201ENST00000407447 340 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 U3.39-201ENST00000408569 239 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 MIR1183-201ENST00000408856 89 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
NUP88Q99567 RNU6-908P-201ENST00000410160 94 ntBASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 141.8 ms