Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AL592148.2-201ENST00000612210 372 ntBASIC0.49□□□□□ -2.33
VPS13AQ96RL7 DUSP12P1-201ENST00000612874 516 ntBASIC0.49□□□□□ -2.33
VPS13AQ96RL7 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC0.49□□□□□ -2.33
VPS13AQ96RL7 RNA5SP368-201ENST00000364298 116 ntBASIC0.49□□□□□ -2.33
VPS13AQ96RL7 RNU6-178P-201ENST00000384631 104 ntBASIC0.49□□□□□ -2.33
VPS13AQ96RL7 RN7SKP61-201ENST00000410642 295 ntBASIC0.49□□□□□ -2.33
VPS13AQ96RL7 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.49□□□□□ -2.33
VPS13AQ96RL7 RPS24P6-201ENST00000452670 400 ntBASIC0.49□□□□□ -2.33
VPS13AQ96RL7 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.49□□□□□ -2.33
VPS13AQ96RL7 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC0.49□□□□□ -2.33
VPS13AQ96RL7 AL163153.1-201ENST00000554223 283 ntBASIC0.49□□□□□ -2.33
VPS13AQ96RL7 AC004817.2-201ENST00000561794 651 ntBASIC0.49□□□□□ -2.33
VPS13AQ96RL7 AC131280.1-202ENST00000624067 4211 ntBASIC0.48□□□□□ -2.33
VPS13AQ96RL7 MIR518A2-201ENST00000384966 87 ntBASIC0.48□□□□□ -2.33
VPS13AQ96RL7 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC0.48□□□□□ -2.33
VPS13AQ96RL7 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC0.48□□□□□ -2.33
VPS13AQ96RL7 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC0.48□□□□□ -2.33
VPS13AQ96RL7 RRN3P3-201ENST00000549207 578 ntBASIC0.48□□□□□ -2.33
VPS13AQ96RL7 MIR5087-201ENST00000635826 76 ntBASIC0.48□□□□□ -2.33
VPS13AQ96RL7 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
VPS13AQ96RL7 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC0.48□□□□□ -2.33
VPS13AQ96RL7 AC006461.1-201ENST00000412637 326 ntBASIC0.48□□□□□ -2.33
VPS13AQ96RL7 MED14P1-201ENST00000430517 648 ntBASIC0.48□□□□□ -2.33
VPS13AQ96RL7 RPL31P60-201ENST00000478450 367 ntBASIC0.48□□□□□ -2.33
VPS13AQ96RL7 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.48□□□□□ -2.33
VPS13AQ96RL7 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.48□□□□□ -2.33
VPS13AQ96RL7 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.48□□□□□ -2.33
VPS13AQ96RL7 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
VPS13AQ96RL7 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC0.47□□□□□ -2.33
VPS13AQ96RL7 RPL39P28-201ENST00000465655 155 ntBASIC0.47□□□□□ -2.33
VPS13AQ96RL7 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC0.47□□□□□ -2.33
VPS13AQ96RL7 RNU6-72P-201ENST00000384285 79 ntBASIC0.47□□□□□ -2.33
VPS13AQ96RL7 AP000567.1-201ENST00000406413 156 ntBASIC0.47□□□□□ -2.33
VPS13AQ96RL7 RNU4ATAC16P-201ENST00000408512 126 ntBASIC0.47□□□□□ -2.33
VPS13AQ96RL7 RPL30P13-201ENST00000418873 348 ntBASIC0.47□□□□□ -2.33
VPS13AQ96RL7 AC098862.1-201ENST00000504991 413 ntBASIC0.47□□□□□ -2.33
VPS13AQ96RL7 AC118282.2-201ENST00000508739 374 ntBASIC0.47□□□□□ -2.33
VPS13AQ96RL7 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC0.47□□□□□ -2.33
VPS13AQ96RL7 AL589743.1-201ENST00000551932 2712 ntBASIC0.47□□□□□ -2.33
VPS13AQ96RL7 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.47□□□□□ -2.33
VPS13AQ96RL7 AC009902.3-201ENST00000606235 2172 ntBASIC0.47□□□□□ -2.33
VPS13AQ96RL7 RFESDP1-201ENST00000422350 461 ntBASIC0.47□□□□□ -2.33
VPS13AQ96RL7 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC0.47□□□□□ -2.33
VPS13AQ96RL7 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.47□□□□□ -2.33
VPS13AQ96RL7 AC025857.1-201ENST00000525252 377 ntBASIC0.47□□□□□ -2.33
VPS13AQ96RL7 AC022662.1-201ENST00000580252 331 ntBASIC0.47□□□□□ -2.33
VPS13AQ96RL7 AC245128.3-201ENST00000594721 748 ntBASIC0.47□□□□□ -2.33
VPS13AQ96RL7 SNORA9.1-201ENST00000362412 131 ntBASIC0.46□□□□□ -2.34
VPS13AQ96RL7 MIR153-2-201ENST00000385225 87 ntBASIC0.46□□□□□ -2.34
VPS13AQ96RL7 U8.14-201ENST00000390843 143 ntBASIC0.46□□□□□ -2.34
VPS13AQ96RL7 RABEPKP1-201ENST00000440529 1026 ntBASIC0.46□□□□□ -2.34
VPS13AQ96RL7 TPT1P8-201ENST00000510120 555 ntBASIC0.46□□□□□ -2.34
VPS13AQ96RL7 MTND5P14-201ENST00000441481 1267 ntBASIC0.46□□□□□ -2.34
VPS13AQ96RL7 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
VPS13AQ96RL7 AC003001.2-201ENST00000616294 831 ntBASIC0.46□□□□□ -2.34
VPS13AQ96RL7 AC087359.1-201ENST00000508335 1740 ntBASIC0.46□□□□□ -2.34
VPS13AQ96RL7 AL136520.1-201ENST00000600311 1322 ntBASIC0.46□□□□□ -2.34
VPS13AQ96RL7 SNORA8.3-201ENST00000384679 139 ntBASIC0.45□□□□□ -2.34
VPS13AQ96RL7 Z80107.1-201ENST00000436830 412 ntBASIC0.45□□□□□ -2.34
VPS13AQ96RL7 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.45□□□□□ -2.34
VPS13AQ96RL7 AC068620.3-201ENST00000602749 560 ntBASIC0.45□□□□□ -2.34
VPS13AQ96RL7 uc_338.14-201ENST00000613162 166 ntBASIC0.45□□□□□ -2.34
VPS13AQ96RL7 RNU6-39P-201ENST00000384344 107 ntBASIC0.45□□□□□ -2.34
VPS13AQ96RL7 PTP4A1P1-201ENST00000420539 515 ntBASIC0.45□□□□□ -2.34
VPS13AQ96RL7 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC0.45□□□□□ -2.34
VPS13AQ96RL7 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC0.45□□□□□ -2.34
VPS13AQ96RL7 OR6C72P-201ENST00000451403 892 ntBASIC0.45□□□□□ -2.34
VPS13AQ96RL7 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.45□□□□□ -2.34
VPS13AQ96RL7 AP001485.1-201ENST00000604799 199 ntBASIC0.45□□□□□ -2.34
VPS13AQ96RL7 AC108676.2-201ENST00000605225 163 ntBASIC0.45□□□□□ -2.34
VPS13AQ96RL7 AC135178.6-201ENST00000605314 398 ntBASIC0.45□□□□□ -2.34
VPS13AQ96RL7 AL161734.1-201ENST00000609720 557 ntBASIC0.45□□□□□ -2.34
VPS13AQ96RL7 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.45□□□□□ -2.34
VPS13AQ96RL7 MIR515-2-201ENST00000384883 83 ntBASIC0.45□□□□□ -2.34
VPS13AQ96RL7 MIR515-1-201ENST00000384884 83 ntBASIC0.45□□□□□ -2.34
VPS13AQ96RL7 Y_RNA.700-201ENST00000516806 100 ntBASIC0.45□□□□□ -2.34
VPS13AQ96RL7 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC0.45□□□□□ -2.34
VPS13AQ96RL7 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC0.45□□□□□ -2.34
VPS13AQ96RL7 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC0.44□□□□□ -2.34
VPS13AQ96RL7 SNORD23.1-201ENST00000408212 104 ntBASIC0.44□□□□□ -2.34
VPS13AQ96RL7 RNA5SP450-201ENST00000411206 102 ntBASIC0.44□□□□□ -2.34
VPS13AQ96RL7 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC0.44□□□□□ -2.34
VPS13AQ96RL7 KLRA1P-201ENST00000503499 986 ntBASIC0.44□□□□□ -2.34
VPS13AQ96RL7 OR5BM1P-201ENST00000512021 366 ntBASIC0.44□□□□□ -2.34
VPS13AQ96RL7 OSBPL9P3-201ENST00000534523 595 ntBASIC0.44□□□□□ -2.34
VPS13AQ96RL7 AC008751.2-201ENST00000597885 980 ntBASIC0.44□□□□□ -2.34
VPS13AQ96RL7 AL096840.1-201ENST00000603287 93 ntBASIC0.44□□□□□ -2.34
VPS13AQ96RL7 SNRPGP17-201ENST00000603780 214 ntBASIC0.44□□□□□ -2.34
VPS13AQ96RL7 AC073111.2-201ENST00000605657 1075 ntBASIC0.44□□□□□ -2.34
VPS13AQ96RL7 AL136313.1-201ENST00000624804 202 ntBASIC0.44□□□□□ -2.34
VPS13AQ96RL7 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC0.44□□□□□ -2.34
VPS13AQ96RL7 CCNB2P1-201ENST00000399411 1150 ntBASIC0.44□□□□□ -2.34
VPS13AQ96RL7 AC136932.1-201ENST00000574771 208 ntBASIC0.44□□□□□ -2.34
VPS13AQ96RL7 AC006065.5-201ENST00000623427 349 ntBASIC0.44□□□□□ -2.34
VPS13AQ96RL7 SNORA22-201ENST00000383907 134 ntBASIC0.43□□□□□ -2.34
VPS13AQ96RL7 SNORA22C-201ENST00000384614 134 ntBASIC0.43□□□□□ -2.34
VPS13AQ96RL7 RSL24D1P8-201ENST00000434442 492 ntBASIC0.43□□□□□ -2.34
VPS13AQ96RL7 AC093155.1-201ENST00000440164 826 ntBASIC0.43□□□□□ -2.34
VPS13AQ96RL7 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.43□□□□□ -2.34
VPS13AQ96RL7 MZT1P2-201ENST00000604387 248 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms