Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MIR4765-201ENST00000585007 77 ntBASIC1.7□□□□□ -2.14
CCDC42Q96M95 AP003973.1-201ENST00000604639 691 ntBASIC1.7□□□□□ -2.14
CCDC42Q96M95 MIR502-201ENST00000606349 86 ntBASIC1.7□□□□□ -2.14
CCDC42Q96M95 AL121652.1-201ENST00000608851 448 ntBASIC1.7□□□□□ -2.14
CCDC42Q96M95 AC006026.1-201ENST00000444025 1803 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC1.69□□□□□ -2.14
CCDC42Q96M95 RNA5SP276-201ENST00000362580 94 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 SNORD114-1-201ENST00000362705 72 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 U8.3-201ENST00000363321 132 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 RNU6-353P-201ENST00000364266 108 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 SUGT1P1-201ENST00000379514 476 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 AL356432.1-201ENST00000405809 419 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 NDUFS5P4-201ENST00000412983 318 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 MTATP6P27-201ENST00000416987 621 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 AL512661.1-201ENST00000434586 1253 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 AC023790.1-201ENST00000482174 347 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 AC140059.1-201ENST00000489238 361 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC1.69□□□□□ -2.14
CCDC42Q96M95 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.69□□□□□ -2.14
CCDC42Q96M95 MRPS33P3-201ENST00000513456 322 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 CBX3P4-201ENST00000538909 354 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 AC005951.2-201ENST00000576282 495 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 MIR3126-201ENST00000577443 74 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 MIR4666A-201ENST00000580160 79 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 AC024619.4-201ENST00000580924 316 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC1.69□□□□□ -2.14
CCDC42Q96M95 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC1.69□□□□□ -2.14
CCDC42Q96M95 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC1.69□□□□□ -2.14
CCDC42Q96M95 AC007038.2-201ENST00000608095 740 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.69□□□□□ -2.14
CCDC42Q96M95 MTND4P23-201ENST00000447723 1363 ntBASIC1.69□□□□□ -2.14
CCDC42Q96M95 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CCDC42Q96M95 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
CCDC42Q96M95 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
CCDC42Q96M95 RNU6-1066P-201ENST00000363573 105 ntBASIC1.68□□□□□ -2.14
CCDC42Q96M95 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC42Q96M95 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.68□□□□□ -2.14
CCDC42Q96M95 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC42Q96M95 AL121882.1-201ENST00000422893 417 ntBASIC1.68□□□□□ -2.14
CCDC42Q96M95 BX510359.4-201ENST00000423750 193 ntBASIC1.68□□□□□ -2.14
CCDC42Q96M95 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC1.68□□□□□ -2.14
CCDC42Q96M95 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
CCDC42Q96M95 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC1.68□□□□□ -2.14
CCDC42Q96M95 AC026410.2-201ENST00000460281 156 ntBASIC1.68□□□□□ -2.14
CCDC42Q96M95 UBL5P3-201ENST00000475112 231 ntBASIC1.68□□□□□ -2.14
CCDC42Q96M95 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC1.68□□□□□ -2.14
CCDC42Q96M95 AC055855.1-201ENST00000489563 579 ntBASIC1.68□□□□□ -2.14
CCDC42Q96M95 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC1.68□□□□□ -2.14
CCDC42Q96M95 AC096745.1-201ENST00000509945 370 ntBASIC1.68□□□□□ -2.14
CCDC42Q96M95 RNA5SP137-201ENST00000516833 135 ntBASIC1.68□□□□□ -2.14
CCDC42Q96M95 SNORD19.2-201ENST00000516978 73 ntBASIC1.68□□□□□ -2.14
CCDC42Q96M95 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.68□□□□□ -2.14
CCDC42Q96M95 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
CCDC42Q96M95 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC1.68□□□□□ -2.14
CCDC42Q96M95 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC42Q96M95 NACAP3-201ENST00000552100 481 ntBASIC1.68□□□□□ -2.14
CCDC42Q96M95 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC1.68□□□□□ -2.14
CCDC42Q96M95 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
CCDC42Q96M95 AL158211.4-201ENST00000606988 584 ntBASIC1.68□□□□□ -2.14
CCDC42Q96M95 uc_338.14-201ENST00000613162 166 ntBASIC1.68□□□□□ -2.14
CCDC42Q96M95 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
CCDC42Q96M95 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
CCDC42Q96M95 AL356473.1-201ENST00000406203 1408 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
CCDC42Q96M95 RNU6-486P-201ENST00000363116 107 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 RNU6-549P-201ENST00000384433 107 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 HMGN2P39-201ENST00000398005 273 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 PTGES3P2-201ENST00000407942 482 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 AL445669.1-201ENST00000426743 755 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 FABP5P14-201ENST00000437273 393 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 AC092393.1-201ENST00000439625 742 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 DNAJC19P4-201ENST00000440115 345 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 SSXP1-201ENST00000453640 473 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC1.67□□□□□ -2.14
CCDC42Q96M95 AP005639.2-201ENST00000527592 928 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 AK6P1-201ENST00000540219 478 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC42Q96M95 ADAM3B-201ENST00000569937 840 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 MIR4255-201ENST00000579351 72 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 AC011451.2-201ENST00000604303 598 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 AL138963.2-201ENST00000605137 226 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 AC126118.1-201ENST00000607744 628 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 AC024257.5-201ENST00000612739 531 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
CCDC42Q96M95 PAPPA-AS1-201ENST00000445861 2450 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 AP000648.3-201ENST00000623539 4507 ntBASIC1.67□□□□□ -2.14
CCDC42Q96M95 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
CCDC42Q96M95 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
CCDC42Q96M95 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC1.66□□□□□ -2.14
CCDC42Q96M95 MIR506-201ENST00000384998 124 ntBASIC1.66□□□□□ -2.14
CCDC42Q96M95 MIR320A-201ENST00000385302 82 ntBASIC1.66□□□□□ -2.14
CCDC42Q96M95 U8.13-201ENST00000390842 128 ntBASIC1.66□□□□□ -2.14
CCDC42Q96M95 RNU6-932P-201ENST00000391108 106 ntBASIC1.66□□□□□ -2.14
CCDC42Q96M95 RPS24P7-201ENST00000416921 246 ntBASIC1.66□□□□□ -2.14
CCDC42Q96M95 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC1.66□□□□□ -2.14
CCDC42Q96M95 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC1.66□□□□□ -2.14
CCDC42Q96M95 USP9YP10-201ENST00000454868 628 ntBASIC1.66□□□□□ -2.14
CCDC42Q96M95 SNORD121B-201ENST00000458838 81 ntBASIC1.66□□□□□ -2.14
CCDC42Q96M95 AC087884.1-201ENST00000469738 328 ntBASIC1.66□□□□□ -2.14
CCDC42Q96M95 TRBV12-1-201ENST00000479785 344 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms