Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RNU6-140P-201ENST00000384566 108 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 SNORA41-201ENST00000384675 132 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 SNORA80E-201ENST00000384744 137 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AC244035.1-201ENST00000430042 390 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AC104389.3-201ENST00000445629 235 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 CACYBPP2-201ENST00000453625 678 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 RNU7-59P-201ENST00000459101 61 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AC087588.1-201ENST00000462203 316 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AC107626.1-201ENST00000471084 183 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AC138853.1-201ENST00000503549 823 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 RNU6-759P-201ENST00000516740 103 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 MTATP6P15-201ENST00000527233 835 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AP000907.2-201ENST00000530827 353 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 PRELID2P1-201ENST00000552837 301 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 CYCSP39-201ENST00000565821 309 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 MIR3118-1-201ENST00000581787 76 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AC105129.3-201ENST00000605455 485 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AC007619.2-201ENST00000605743 379 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AC018638.7-201ENST00000605836 1114 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AC004908.2-201ENST00000609090 574 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AC103710.2-201ENST00000609912 942 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AL355816.2-201ENST00000610049 647 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AC087683.2-201ENST00000611384 326 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AL442067.2-201ENST00000614033 363 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AC009159.1-201ENST00000618386 642 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 U2.21-201ENST00000637295 81 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 PAPPA-AS1-201ENST00000445861 2450 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 SNORD62.1-201ENST00000362541 86 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 RNU6-223P-201ENST00000362830 107 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 RNU4-1-201ENST00000363925 141 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 RNU5A-8P-201ENST00000364102 114 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 SNORD46.1-201ENST00000364139 104 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 RNU6-253P-201ENST00000384730 105 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 MORF4L1P6-201ENST00000418771 268 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AC005005.2-201ENST00000420779 380 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AL358075.3-201ENST00000426289 226 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AL365184.2-201ENST00000431139 435 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AL512286.1-201ENST00000439244 400 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AC118469.1-201ENST00000442943 488 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 RPS15AP27-201ENST00000449183 343 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 ZNF114P1-201ENST00000453500 292 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 RNU7-125P-201ENST00000458760 62 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 EIF4EP3-201ENST00000498782 656 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 RPF2P2-201ENST00000504693 896 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AC114797.1-201ENST00000514003 728 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 RNU6-927P-201ENST00000516199 100 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 RN7SKP258-201ENST00000517151 304 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AP006587.4-201ENST00000526053 529 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 DEFB108A-201ENST00000530110 222 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AP003122.4-201ENST00000530980 758 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 ARL2BPP2-201ENST00000550907 489 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AC121758.2-201ENST00000553271 193 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 MIR5697-201ENST00000578045 78 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 MIR1254-2-201ENST00000579553 63 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 WISP1-OT1-201ENST00000602893 642 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AP000860.1-201ENST00000605250 559 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AL360219.1-201ENST00000610230 366 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AC004223.4-201ENST00000612426 332 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 CU459211.1-201ENST00000635667 749 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 MIR4275-201ENST00000636486 87 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 AL445523.1-201ENST00000451184 1362 ntBASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
CCDC54Q8NEL0 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AP000568.1-201ENST00000282964 442 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 SNORA68.1-201ENST00000364537 132 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 RNU1-52P-201ENST00000384190 164 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 SNORA9-201ENST00000384215 133 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 MIR27B-201ENST00000385129 97 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AL162578.1-201ENST00000406202 378 ntBASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC54Q8NEL0 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 162.5 ms