Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC144BQ3MJ40 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC144BQ3MJ40 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC144BQ3MJ40 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC144BQ3MJ40 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 AC066616.2-201ENST00000559334 1481 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 SNORA63.1-201ENST00000362493 131 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 SNORD35B-201ENST00000363660 87 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 Y_RNA.333-201ENST00000365274 102 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 SNORD6-201ENST00000365444 73 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 EEF1A1P40-201ENST00000412883 573 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 RPL7P10-201ENST00000417407 739 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 RPL7P28-201ENST00000437739 740 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 RPL30P14-201ENST00000482744 348 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 SUMO2P6-201ENST00000505273 288 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 AC098799.2-201ENST00000509466 868 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 RNU7-143P-201ENST00000516781 65 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 SNORA20.3-201ENST00000516880 132 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 RNA5SP179-201ENST00000517284 121 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 AC018638.8-201ENST00000588755 281 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 AL035413.2-201ENST00000604801 525 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 FTX_3.1-201ENST00000610451 147 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 DUSP12P1-201ENST00000612874 516 ntBASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC144BQ3MJ40 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 AC007656.2-201ENST00000624902 4547 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 RNA5SP119-201ENST00000362715 117 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 Y_RNA.86-201ENST00000363020 111 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 Y_RNA.160-201ENST00000363677 92 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 RNU6-371P-201ENST00000364283 108 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 RNY3P14-201ENST00000384309 102 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 RNU6-45P-201ENST00000384471 107 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 RNU6-1035P-201ENST00000384477 107 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 U8.11-201ENST00000384699 133 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 U8.12-201ENST00000384701 133 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 RPL21P111-201ENST00000418453 477 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 U8.18-201ENST00000459285 133 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 AC007547.1-201ENST00000462177 490 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 HMGN2P26-201ENST00000463169 339 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 AC006445.2-201ENST00000510061 472 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 HIGD1AP1-201ENST00000550979 275 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 GNRHR2P1-201ENST00000555315 631 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 AC091167.4-201ENST00000605079 184 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 AC008962.1-201ENST00000605729 304 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 SNORD39.4-201ENST00000620099 78 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 AP005264.7-201ENST00000625003 745 ntBASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.51□□□□□ -1.69
CCDC144BQ3MJ40 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 AP001148.1-201ENST00000624124 2359 ntBASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 RNU1-18P-201ENST00000363062 164 ntBASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 MDM4-202ENST00000367180 547 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 MIR7-3-201ENST00000384898 110 ntBASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 MIR1183-201ENST00000408856 89 ntBASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 RNU6-1025P-201ENST00000410629 104 ntBASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 ATP5HP2-201ENST00000433885 485 ntBASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 RNU6-1208P-201ENST00000459588 107 ntBASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 HMGB1P30-201ENST00000492455 606 ntBASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC144BQ3MJ40 AC008716.1-201ENST00000511084 513 ntBASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms