Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 SNORD116-3-201ENST00000384287 95 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 SNORD116-7-201ENST00000384404 95 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 SNORD116-5-201ENST00000384462 95 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
HMGCS2P54868 RNU2-43P-201ENST00000410306 190 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 ATG3P1-201ENST00000419507 911 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 SDCBPP3-201ENST00000419629 891 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC2.76□□□□□ -1.97
HMGCS2P54868 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC2.76□□□□□ -1.97
HMGCS2P54868 AC098826.1-201ENST00000433943 471 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 MTND4P32-201ENST00000437189 1237 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 AC096638.1-201ENST00000444678 216 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 RPL23AP49-201ENST00000492925 468 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 AF131216.2-201ENST00000512316 564 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
HMGCS2P54868 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.76□□□□□ -1.97
HMGCS2P54868 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.76□□□□□ -1.97
HMGCS2P54868 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.76□□□□□ -1.97
HMGCS2P54868 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.76□□□□□ -1.97
HMGCS2P54868 ACTR3BP3-201ENST00000565577 979 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 AC060771.1-201ENST00000582031 164 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.76□□□□□ -1.97
HMGCS2P54868 AC239868.4-201ENST00000608318 671 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 AL391813.2-201ENST00000609113 322 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 AC012360.2-201ENST00000609349 391 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 AC073114.1-201ENST00000612027 490 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 AL450472.3-201ENST00000615578 367 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 AC009812.4-201ENST00000569134 1805 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 AC016717.2-201ENST00000609089 5141 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HMGCS2P54868 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.76□□□□□ -1.97
HMGCS2P54868 AC092125.1-201ENST00000562568 1995 ntBASIC2.76□□□□□ -1.97
HMGCS2P54868 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.76□□□□□ -1.97
HMGCS2P54868 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.75□□□□□ -1.97
HMGCS2P54868 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.75□□□□□ -1.97
HMGCS2P54868 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HMGCS2P54868 AC008264.2-201ENST00000610193 3731 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HMGCS2P54868 SNORA51.4-201ENST00000364993 124 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 RNU6-809P-201ENST00000384461 107 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 RPS3AP24-201ENST00000407896 734 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.75□□□□□ -1.97
HMGCS2P54868 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 MTND1P28-201ENST00000435623 950 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 AC090774.1-201ENST00000435925 246 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.75□□□□□ -1.97
HMGCS2P54868 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.75□□□□□ -1.97
HMGCS2P54868 RAC1P7-201ENST00000445367 377 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.75□□□□□ -1.97
HMGCS2P54868 AP1S2P1-201ENST00000457344 379 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 AL031183.1-201ENST00000457667 207 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 AC116337.2-201ENST00000477662 156 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 AC108860.1-201ENST00000484521 383 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 AC055855.1-201ENST00000489563 579 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.75□□□□□ -1.97
HMGCS2P54868 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.75□□□□□ -1.97
HMGCS2P54868 RNA5SP385-201ENST00000515947 110 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 RN7SKP282-201ENST00000516824 299 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 AP002748.2-201ENST00000528671 348 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.75□□□□□ -1.97
HMGCS2P54868 AC125611.2-201ENST00000551907 647 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC2.75□□□□□ -1.97
HMGCS2P54868 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.75□□□□□ -1.97
HMGCS2P54868 ZNF519P3-201ENST00000557158 1032 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.75□□□□□ -1.97
HMGCS2P54868 U73023.1-201ENST00000603134 700 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 AC135507.1-201ENST00000607214 561 ntBASIC2.75□□□□□ -1.97
HMGCS2P54868 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.75□□□□□ -1.97
HMGCS2P54868 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
HMGCS2P54868 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
HMGCS2P54868 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
HMGCS2P54868 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.75□□□□□ -1.97
HMGCS2P54868 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
HMGCS2P54868 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.74□□□□□ -1.97
HMGCS2P54868 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
HMGCS2P54868 Y_RNA.77-201ENST00000362962 107 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 RNU5E-8P-201ENST00000363502 116 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 RNU6-1078P-201ENST00000364522 103 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 RNU5E-5P-201ENST00000365379 116 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 MIR19A-201ENST00000384878 82 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 MIR764-201ENST00000390811 85 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 SNORD115.1-201ENST00000391109 76 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 AL162578.1-201ENST00000406202 378 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 SNORD88.1-201ENST00000408684 91 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 RN7SKP140-201ENST00000411196 284 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 AL356583.2-201ENST00000426536 280 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 UBE2V1P13-201ENST00000436983 439 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC2.74□□□□□ -1.97
HMGCS2P54868 RPL26P6-201ENST00000440913 438 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 AL049734.2-201ENST00000441066 616 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.74□□□□□ -1.97
HMGCS2P54868 TPT1P14-201ENST00000448018 505 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.74□□□□□ -1.97
HMGCS2P54868 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC2.74□□□□□ -1.97
HMGCS2P54868 RPS26P21-201ENST00000475397 348 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 RN7SL297P-201ENST00000483161 293 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 RPL9P6-201ENST00000492764 598 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 AC105313.1-201ENST00000509121 353 ntBASIC2.74□□□□□ -1.97
HMGCS2P54868 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.74□□□□□ -1.97
HMGCS2P54868 FABP5P5-201ENST00000515537 406 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms