Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL157827.1-201ENST00000447622 132 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.43□□□□□ -2.02
COL4A4P53420 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.43□□□□□ -2.02
COL4A4P53420 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC2.43□□□□□ -2.02
COL4A4P53420 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC2.43□□□□□ -2.02
COL4A4P53420 RNU6-358P-201ENST00000516564 75 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 AC023632.1-201ENST00000518463 375 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 AC107918.3-201ENST00000533272 382 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 AL049870.4-201ENST00000555741 486 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 AC026464.5-201ENST00000562497 722 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.43□□□□□ -2.02
COL4A4P53420 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
COL4A4P53420 AL121757.2-201ENST00000611223 313 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 AC112204.3-201ENST00000623822 332 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
COL4A4P53420 CYP3A51P-201ENST00000633513 256 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 OR5H6-203ENST00000642105 978 ntBASIC2.43□□□□□ -2.02
COL4A4P53420 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
COL4A4P53420 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC2.42□□□□□ -2.02
COL4A4P53420 ZNF355P-201ENST00000427301 3216 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 AL512646.1-201ENST00000269395 1077 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
COL4A4P53420 CBX3P1-201ENST00000325243 554 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 Y_RNA.18-201ENST00000362461 102 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 RNA5SP213-201ENST00000391031 106 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 AC092745.2-202ENST00000411880 369 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 AC010385.1-201ENST00000412374 256 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.42□□□□□ -2.02
COL4A4P53420 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.42□□□□□ -2.02
COL4A4P53420 AC008850.1-201ENST00000427546 362 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 Z82205.1-201ENST00000428456 297 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC2.42□□□□□ -2.02
COL4A4P53420 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC2.42□□□□□ -2.02
COL4A4P53420 PNPLA4P1-201ENST00000458328 305 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 AC092989.1-201ENST00000481235 277 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 AC023424.2-201ENST00000493479 777 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC2.42□□□□□ -2.02
COL4A4P53420 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.42□□□□□ -2.02
COL4A4P53420 NDUFB4P2-201ENST00000509515 391 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC2.42□□□□□ -2.02
COL4A4P53420 AC009646.1-201ENST00000510455 318 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 AC024589.1-201ENST00000512207 263 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 RNA5SP480-201ENST00000516840 109 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.42□□□□□ -2.02
COL4A4P53420 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.42□□□□□ -2.02
COL4A4P53420 AC004486.1-201ENST00000546846 233 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 MIR3671-201ENST00000580455 88 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 AC011494.1-201ENST00000596454 237 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 AC092354.1-201ENST00000606057 376 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 AL627309.6-201ENST00000606857 840 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 AC008536.2-201ENST00000607284 349 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 snoU13.31-201ENST00000607291 104 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 AC024560.3-201ENST00000608482 349 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
COL4A4P53420 MIR6863-201ENST00000636112 90 ntBASIC2.42□□□□□ -2.02
COL4A4P53420 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
COL4A4P53420 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC2.42□□□□□ -2.02
COL4A4P53420 RNY4P14-201ENST00000363656 96 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 RNU4-12P-201ENST00000365233 139 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 RNU1-138P-201ENST00000384093 164 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 Y_RNA.535-201ENST00000384612 99 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 MIR525-201ENST00000384978 85 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 Y_RNA.582-201ENST00000391023 95 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
COL4A4P53420 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC2.41□□□□□ -2.02
COL4A4P53420 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC2.41□□□□□ -2.02
COL4A4P53420 USP9YP8-201ENST00000441913 500 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC2.41□□□□□ -2.02
COL4A4P53420 GDI2P2-201ENST00000445131 608 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 NFU1P2-201ENST00000448700 469 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.41□□□□□ -2.02
COL4A4P53420 AP001086.1-201ENST00000494882 321 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 MTCYBP18-201ENST00000501056 747 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 MTND3P22-201ENST00000510932 243 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 RNU6-1153P-201ENST00000516760 105 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC2.41□□□□□ -2.02
COL4A4P53420 CA1-215ENST00000522389 551 ntTSL 3 BASIC2.41□□□□□ -2.02
COL4A4P53420 MIR4666A-201ENST00000580160 79 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC2.41□□□□□ -2.02
COL4A4P53420 AP001542.2-201ENST00000593141 364 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 AP005137.2-201ENST00000609238 400 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 AC055764.2-201ENST00000610089 670 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 FAM157B-203ENST00000639350 358 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 AC091152.2-201ENST00000591628 2569 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 AL022578.1-201ENST00000439330 1433 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC2.41□□□□□ -2.02
COL4A4P53420 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.41□□□□□ -2.02
COL4A4P53420 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
COL4A4P53420 CASC19-280ENST00000642102 1351 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
COL4A4P53420 Y_RNA.38-201ENST00000362617 102 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 Y_RNA.256-201ENST00000364594 104 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 Y_RNA.302-201ENST00000364997 102 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
COL4A4P53420 FCF1P10-201ENST00000407590 479 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.41□□□□□ -2.02
COL4A4P53420 PIGPP2-201ENST00000411569 458 ntBASIC2.41□□□□□ -2.02
COL4A4P53420 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC2.41□□□□□ -2.02
COL4A4P53420 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms