Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.41□□□□□ -1.7
MRE11P49959 AC010653.1-201ENST00000571108 881 ntBASIC4.41□□□□□ -1.7
MRE11P49959 MIR4703-201ENST00000577728 79 ntBASIC4.41□□□□□ -1.7
MRE11P49959 MIR5047-201ENST00000579212 100 ntBASIC4.41□□□□□ -1.7
MRE11P49959 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC4.41□□□□□ -1.7
MRE11P49959 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC4.41□□□□□ -1.7
MRE11P49959 AC103710.3-201ENST00000608157 948 ntBASIC4.41□□□□□ -1.7
MRE11P49959 AC090971.5-201ENST00000621102 293 ntBASIC4.41□□□□□ -1.7
MRE11P49959 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.41□□□□□ -1.7
MRE11P49959 AC006065.5-201ENST00000623427 349 ntBASIC4.41□□□□□ -1.7
MRE11P49959 AL136313.1-201ENST00000624804 202 ntBASIC4.41□□□□□ -1.7
MRE11P49959 MIR3651-201ENST00000630427 90 ntBASIC4.41□□□□□ -1.7
MRE11P49959 AC134503.1-201ENST00000633048 54 ntBASIC4.41□□□□□ -1.7
MRE11P49959 TAB3P1-202ENST00000452645 1634 ntBASIC4.41□□□□□ -1.7
MRE11P49959 AC058791.1-201ENST00000608412 3198 ntBASIC4.41□□□□□ -1.7
MRE11P49959 EXOC5P1-201ENST00000510543 1969 ntBASIC4.41□□□□□ -1.7
MRE11P49959 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
MRE11P49959 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
MRE11P49959 MTND4P27-201ENST00000450813 1354 ntBASIC4.4□□□□□ -1.7
MRE11P49959 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
MRE11P49959 AC073073.2-201ENST00000609827 2578 ntBASIC4.4□□□□□ -1.7
MRE11P49959 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
MRE11P49959 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
MRE11P49959 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
MRE11P49959 U3.12-201ENST00000364498 214 ntBASIC4.4□□□□□ -1.71
MRE11P49959 Y_RNA.259-201ENST00000364619 101 ntBASIC4.4□□□□□ -1.71
MRE11P49959 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.4□□□□□ -1.71
MRE11P49959 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4.4□□□□□ -1.71
MRE11P49959 RNU6-301P-201ENST00000384277 107 ntBASIC4.4□□□□□ -1.71
MRE11P49959 SNORD51-201ENST00000384320 80 ntBASIC4.4□□□□□ -1.71
MRE11P49959 Y_RNA.579-201ENST00000390939 94 ntBASIC4.4□□□□□ -1.71
MRE11P49959 AC016696.1-201ENST00000446949 318 ntBASIC4.4□□□□□ -1.71
MRE11P49959 RNU7-180P-201ENST00000459240 63 ntBASIC4.4□□□□□ -1.71
MRE11P49959 RPL37P6-202ENST00000464216 403 ntBASIC4.4□□□□□ -1.71
MRE11P49959 KLHL2P1-201ENST00000508691 521 ntBASIC4.4□□□□□ -1.71
MRE11P49959 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC4.4□□□□□ -1.71
MRE11P49959 RN7SKP57-201ENST00000517248 293 ntBASIC4.4□□□□□ -1.71
MRE11P49959 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.4□□□□□ -1.71
MRE11P49959 TGIF1P1-201ENST00000558095 802 ntBASIC4.4□□□□□ -1.71
MRE11P49959 KLKP1-201ENST00000595979 403 ntBASIC4.4□□□□□ -1.71
MRE11P49959 AP000942.4-201ENST00000604811 241 ntBASIC4.4□□□□□ -1.71
MRE11P49959 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
MRE11P49959 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.39□□□□□ -1.71
MRE11P49959 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
MRE11P49959 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
MRE11P49959 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.39□□□□□ -1.71
MRE11P49959 SNORA60-201ENST00000362396 134 ntBASIC4.39□□□□□ -1.71
MRE11P49959 Y_RNA.301-201ENST00000364990 103 ntBASIC4.39□□□□□ -1.71
MRE11P49959 AL136372.1-201ENST00000403060 228 ntBASIC4.39□□□□□ -1.71
MRE11P49959 AL359634.1-202ENST00000404721 284 ntBASIC4.39□□□□□ -1.71
MRE11P49959 RNU2-36P-201ENST00000410361 191 ntBASIC4.39□□□□□ -1.71
MRE11P49959 BX323014.1-201ENST00000412876 237 ntBASIC4.39□□□□□ -1.71
MRE11P49959 OR6C66P-201ENST00000414917 930 ntBASIC4.39□□□□□ -1.71
MRE11P49959 AL162395.1-201ENST00000457882 422 ntBASIC4.39□□□□□ -1.71
MRE11P49959 AC010401.1-201ENST00000463867 348 ntBASIC4.39□□□□□ -1.71
MRE11P49959 AC084198.1-201ENST00000477747 402 ntBASIC4.39□□□□□ -1.71
MRE11P49959 RPL7P47-201ENST00000497299 556 ntBASIC4.39□□□□□ -1.71
MRE11P49959 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC4.39□□□□□ -1.71
MRE11P49959 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC4.39□□□□□ -1.71
MRE11P49959 RNU1-95P-201ENST00000516357 160 ntBASIC4.39□□□□□ -1.71
MRE11P49959 RNU1-128P-201ENST00000516704 160 ntBASIC4.39□□□□□ -1.71
MRE11P49959 RN7SKP277-201ENST00000516895 283 ntBASIC4.39□□□□□ -1.71
MRE11P49959 RNA5SP503-201ENST00000517047 117 ntBASIC4.39□□□□□ -1.71
MRE11P49959 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.39□□□□□ -1.71
MRE11P49959 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.39□□□□□ -1.71
MRE11P49959 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.39□□□□□ -1.71
MRE11P49959 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.39□□□□□ -1.71
MRE11P49959 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.39□□□□□ -1.71
MRE11P49959 AL118558.2-201ENST00000556294 238 ntBASIC4.39□□□□□ -1.71
MRE11P49959 FRG2DP-202ENST00000566967 323 ntBASIC4.39□□□□□ -1.71
MRE11P49959 MIR3171-201ENST00000584270 74 ntBASIC4.39□□□□□ -1.71
MRE11P49959 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.39□□□□□ -1.71
MRE11P49959 POLR3GP2-201ENST00000588366 668 ntBASIC4.39□□□□□ -1.71
MRE11P49959 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.39□□□□□ -1.71
MRE11P49959 AL022099.1-201ENST00000604551 712 ntBASIC4.39□□□□□ -1.71
MRE11P49959 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.39□□□□□ -1.71
MRE11P49959 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.39□□□□□ -1.71
MRE11P49959 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
MRE11P49959 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
MRE11P49959 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
MRE11P49959 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
MRE11P49959 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
MRE11P49959 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.38□□□□□ -1.71
MRE11P49959 AC244517.1-201ENST00000606030 2086 ntBASIC4.38□□□□□ -1.71
MRE11P49959 ZNF734P-201ENST00000419494 1534 ntBASIC4.38□□□□□ -1.71
MRE11P49959 RNU6-1078P-201ENST00000364522 103 ntBASIC4.38□□□□□ -1.71
MRE11P49959 SNORD42.2-201ENST00000365570 69 ntBASIC4.38□□□□□ -1.71
MRE11P49959 RNU6-43P-201ENST00000384302 107 ntBASIC4.38□□□□□ -1.71
MRE11P49959 MIR128-1-201ENST00000384921 82 ntBASIC4.38□□□□□ -1.71
MRE11P49959 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
MRE11P49959 MIR548P-201ENST00000408336 84 ntBASIC4.38□□□□□ -1.71
MRE11P49959 GTF2IP13-201ENST00000438487 386 ntBASIC4.38□□□□□ -1.71
MRE11P49959 RPL23AP33-201ENST00000442301 452 ntBASIC4.38□□□□□ -1.71
MRE11P49959 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.38□□□□□ -1.71
MRE11P49959 BX276092.4-201ENST00000452056 248 ntBASIC4.38□□□□□ -1.71
MRE11P49959 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.38□□□□□ -1.71
MRE11P49959 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC4.38□□□□□ -1.71
MRE11P49959 RNU7-66P-201ENST00000459469 62 ntBASIC4.38□□□□□ -1.71
MRE11P49959 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.38□□□□□ -1.71
MRE11P49959 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms