Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SNORA23-201ENST00000365128 182 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 RNU1-39P-201ENST00000383897 165 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 RNU6-76P-201ENST00000384060 104 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 Y_RNA.517-201ENST00000384551 106 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
HOXC9P31274 AL512633.1-201ENST00000399931 655 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 AL109755.1-201ENST00000401791 649 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 AP000567.1-201ENST00000406413 156 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 RPS15AP6-201ENST00000420703 385 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 PPP1R11P2-201ENST00000423543 382 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 AC104850.1-201ENST00000435940 476 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXC9P31274 RPL26P6-201ENST00000440913 438 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXC9P31274 RGS5-217ENST00000451759 835 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXC9P31274 CACYBPP2-201ENST00000453625 678 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 HMGN2P16-201ENST00000456802 261 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXC9P31274 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXC9P31274 RNU6-64P-201ENST00000517119 105 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXC9P31274 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXC9P31274 AP000860.1-201ENST00000605250 559 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 AC103710.1-201ENST00000610003 901 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 AC093838.1-201ENST00000613014 469 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 TUG1_2.1-201ENST00000614234 87 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 U4.3-201ENST00000621047 82 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 U6.98-201ENST00000637157 84 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXC9P31274 FARSBP1-201ENST00000435808 1778 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 ZNF658B-202ENST00000615961 3375 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
HOXC9P31274 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.42□□□□□ -1.86
HOXC9P31274 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
HOXC9P31274 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXC9P31274 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
HOXC9P31274 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
HOXC9P31274 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HOXC9P31274 AC007256.1-201ENST00000392253 2765 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXC9P31274 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXC9P31274 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
HOXC9P31274 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXC9P31274 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXC9P31274 RNU6-1042P-201ENST00000384204 107 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 AL136372.1-201ENST00000403060 228 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 RNA5SP129-201ENST00000410276 118 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 RPL21P24-201ENST00000413752 448 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 AC007390.1-201ENST00000415722 356 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 USP9YP20-201ENST00000419224 558 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXC9P31274 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXC9P31274 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXC9P31274 RPL31P35-201ENST00000431058 377 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 MTCO3P5-201ENST00000433620 714 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 AC009961.2-201ENST00000435771 251 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXC9P31274 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXC9P31274 AL513124.1-201ENST00000450410 614 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.41□□□□□ -1.86
HOXC9P31274 YWHAEP4-201ENST00000505390 198 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 ANXA2P1-201ENST00000505539 926 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 RNU6-390P-201ENST00000516259 103 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 SNORA31.22-201ENST00000517204 135 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 ERHP1-201ENST00000523006 310 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXC9P31274 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXC9P31274 AC123904.3-201ENST00000547218 814 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 AC128657.1-201ENST00000549459 145 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 AC146944.4-201ENST00000602697 718 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 AC078795.2-201ENST00000602835 1252 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 AL161734.1-201ENST00000609720 557 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 AC091834.1-201ENST00000614543 472 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 uc_338.12-201ENST00000616344 181 ntBASIC3.41□□□□□ -1.86
HOXC9P31274 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXC9P31274 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXC9P31274 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXC9P31274 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
HOXC9P31274 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
HOXC9P31274 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.4□□□□□ -1.86
HOXC9P31274 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXC9P31274 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HOXC9P31274 RNU6-50P-201ENST00000362356 103 ntBASIC3.4□□□□□ -1.87
HOXC9P31274 RNA5SP295-201ENST00000362655 121 ntBASIC3.4□□□□□ -1.87
HOXC9P31274 RNU5A-1-201ENST00000362698 116 ntBASIC3.4□□□□□ -1.87
HOXC9P31274 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXC9P31274 MIR181B1-201ENST00000385240 110 ntBASIC3.4□□□□□ -1.87
HOXC9P31274 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HOXC9P31274 RPL23AP32-201ENST00000395315 459 ntBASIC3.4□□□□□ -1.87
HOXC9P31274 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.4□□□□□ -1.87
HOXC9P31274 RNU2-66P-201ENST00000410650 161 ntBASIC3.4□□□□□ -1.87
HOXC9P31274 RNU2-8P-201ENST00000410727 190 ntBASIC3.4□□□□□ -1.87
HOXC9P31274 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXC9P31274 RPL7P10-201ENST00000417407 739 ntBASIC3.4□□□□□ -1.87
HOXC9P31274 ELOCP4-201ENST00000420090 333 ntBASIC3.4□□□□□ -1.87
HOXC9P31274 AL159169.1-201ENST00000421119 127 ntBASIC3.4□□□□□ -1.87
HOXC9P31274 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXC9P31274 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXC9P31274 AL358934.1-201ENST00000432346 324 ntBASIC3.4□□□□□ -1.87
HOXC9P31274 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms