Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXD3P31249 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXD3P31249 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXD3P31249 ZNF285B-201ENST00000561698 1767 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 RNU1-108P-201ENST00000362556 161 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 SNORD113-7-201ENST00000363762 77 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 SNORD46.1-201ENST00000364139 104 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 RNU6-371P-201ENST00000364283 108 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 RNU6-512P-201ENST00000364438 103 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 Y_RNA.339-201ENST00000365325 102 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXD3P31249 MIR548F5-201ENST00000408421 86 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 RNA5SP44-201ENST00000410446 133 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 RNU2-71P-201ENST00000411395 189 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXD3P31249 RPL21P66-201ENST00000426566 466 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 AL358472.1-201ENST00000431295 329 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 HMGB1P27-201ENST00000431429 603 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXD3P31249 RPS3AP52-201ENST00000435639 297 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 NDUFA5P4-201ENST00000436704 385 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 RPL7P28-201ENST00000437739 740 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 TXNP1-201ENST00000441872 371 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 AL500522.2-201ENST00000448562 343 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXD3P31249 RNU6-953P-201ENST00000459154 107 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 RPL23AP62-201ENST00000463396 453 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 AC010469.1-201ENST00000463864 576 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 VN1R17P-201ENST00000472048 1090 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 AC117503.1-201ENST00000472241 394 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXD3P31249 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXD3P31249 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXD3P31249 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXD3P31249 AC006499.6-201ENST00000511169 607 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.11□□□□□ -1.91
HOXD3P31249 RNU6-256P-201ENST00000516747 97 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 RNU6-914P-201ENST00000516749 109 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 RNU6-566P-201ENST00000516790 107 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 RNU6-1073P-201ENST00000517182 106 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 TRMT10BP1-201ENST00000519377 943 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 AP005597.4-201ENST00000526762 229 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXD3P31249 AP000889.2-201ENST00000532684 490 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 AC090115.3-201ENST00000553218 849 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 FRG2DP-202ENST00000566967 323 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 MIR3944-201ENST00000581277 108 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 AC012119.1-201ENST00000603184 222 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 MIR6868-201ENST00000611215 58 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 AC034102.8-201ENST00000615146 484 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXD3P31249 AL160413.1-201ENST00000622780 310 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 MTND4LP32-201ENST00000636111 270 ntBASIC3.11□□□□□ -1.91
HOXD3P31249 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXD3P31249 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.11□□□□□ -1.91
HOXD3P31249 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXD3P31249 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXD3P31249 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXD3P31249 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
HOXD3P31249 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXD3P31249 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXD3P31249 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXD3P31249 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXD3P31249 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXD3P31249 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HOXD3P31249 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
HOXD3P31249 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
HOXD3P31249 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXD3P31249 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXD3P31249 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HOXD3P31249 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.1□□□□□ -1.91
HOXD3P31249 RNA5SP124-201ENST00000362739 110 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 Y_RNA.138-201ENST00000363462 102 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 RNU6-1303P-201ENST00000364841 107 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 RNU6-817P-201ENST00000391083 104 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 EIF4E2P1-201ENST00000393781 255 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 MIR450B-201ENST00000401182 78 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXD3P31249 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXD3P31249 VN1R36P-201ENST00000414936 291 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 AL354751.2-201ENST00000415471 210 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 RPL21P90-201ENST00000415692 466 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 CRYBB2P1-203ENST00000415709 538 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.1□□□□□ -1.91
HOXD3P31249 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXD3P31249 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXD3P31249 AL592045.1-201ENST00000429867 352 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 HMGB1P12-201ENST00000438594 598 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 AL118496.2-201ENST00000448300 230 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 AL133547.1-201ENST00000448546 220 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXD3P31249 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXD3P31249 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXD3P31249 snoU13.4-201ENST00000458916 104 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 RPL7P49-201ENST00000471402 708 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 RPL31P60-201ENST00000478450 367 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 SUMO2P6-201ENST00000505273 288 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 HIGD1AP13-201ENST00000509878 289 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXD3P31249 RN7SKP13-201ENST00000515933 244 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms