Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 ARPC3P1-201ENST00000437218 533 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXD4P09016 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXD4P09016 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXD4P09016 AC079448.1-201ENST00000449377 373 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 MTND1P9-201ENST00000453775 944 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 RBM43P1-201ENST00000476891 1081 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 AC083906.5-201ENST00000503722 328 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXD4P09016 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.77□□□□□ -1.97
HOXD4P09016 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXD4P09016 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXD4P09016 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
HOXD4P09016 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.77□□□□□ -1.97
HOXD4P09016 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXD4P09016 MIR3146-201ENST00000580367 79 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXD4P09016 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXD4P09016 TUG1_1.1-201ENST00000610654 145 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 AC004696.1-201ENST00000614345 607 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 AC002076.2-201ENST00000617362 122 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 AC072046.2-201ENST00000618366 268 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 AC136475.10-201ENST00000620253 385 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 AC138649.3-201ENST00000622154 254 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 OR5AK4P-201ENST00000635912 903 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 TAB3P1-202ENST00000452645 1634 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HOXD4P09016 AL138713.1-201ENST00000624026 2130 ntBASIC2.77□□□□□ -1.97
HOXD4P09016 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.76□□□□□ -1.97
HOXD4P09016 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
HOXD4P09016 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HOXD4P09016 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.76□□□□□ -1.97
HOXD4P09016 RNU6-882P-201ENST00000391025 103 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 AL354719.1-201ENST00000406535 843 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 RNU6-1077P-201ENST00000410506 102 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 AC245054.2-201ENST00000415639 319 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.76□□□□□ -1.97
HOXD4P09016 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.76□□□□□ -1.97
HOXD4P09016 BEND7P1-201ENST00000422058 457 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 AC007283.2-201ENST00000424739 197 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXD4P09016 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXD4P09016 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXD4P09016 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.76□□□□□ -1.97
HOXD4P09016 TIMM9P1-201ENST00000436122 256 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.76□□□□□ -1.97
HOXD4P09016 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXD4P09016 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.76□□□□□ -1.97
HOXD4P09016 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXD4P09016 MTND1P1-201ENST00000445453 368 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 AC016696.1-201ENST00000446949 318 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXD4P09016 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXD4P09016 RPS3AP17-201ENST00000472594 777 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 HMGN2P13-201ENST00000476476 274 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXD4P09016 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HOXD4P09016 AC107401.1-201ENST00000503426 685 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXD4P09016 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXD4P09016 AC010587.1-201ENST00000505809 469 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 AC098799.2-201ENST00000509466 868 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 AC009812.2-201ENST00000517657 457 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 MTND1P5-201ENST00000517906 940 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 ERHP1-201ENST00000523006 310 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 AP001804.3-201ENST00000525146 880 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 AC022690.1-201ENST00000526681 550 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXD4P09016 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXD4P09016 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXD4P09016 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXD4P09016 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXD4P09016 AL391840.1-201ENST00000571144 367 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 NRBF2P1-201ENST00000587407 859 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 AL022099.1-201ENST00000604551 712 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 AL022154.1-201ENST00000604698 785 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXD4P09016 AC007038.2-201ENST00000608095 740 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXD4P09016 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 AC009268.2-201ENST00000621925 457 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.76□□□□□ -1.97
HOXD4P09016 AC091903.1-201ENST00000624322 454 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.76□□□□□ -1.97
HOXD4P09016 MTCO1P9-201ENST00000505577 1534 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.76□□□□□ -1.97
HOXD4P09016 CUL1P1-201ENST00000509510 2425 ntBASIC2.76□□□□□ -1.97
HOXD4P09016 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.75□□□□□ -1.97
HOXD4P09016 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
HOXD4P09016 RNU5A-8P-201ENST00000364102 114 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
HOXD4P09016 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
HOXD4P09016 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXD4P09016 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.75□□□□□ -1.97
HOXD4P09016 RNU6-301P-201ENST00000384277 107 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 AC127391.1-201ENST00000411737 98 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 UBE2V1P10-201ENST00000414685 269 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
HOXD4P09016 MTND3P17-201ENST00000416968 344 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 172.7 ms