Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 SNORA31-201ENST00000362607 130 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 AL356867.1-201ENST00000429623 299 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 BX679664.1-201ENST00000434429 253 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 AL118520.1-201ENST00000450770 291 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 MTND3P16-201ENST00000452205 344 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 PMCHL2-203ENST00000457791 237 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 AL162395.1-201ENST00000457882 422 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 SNORD105B-201ENST00000458770 79 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 U3.44-201ENST00000458938 192 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 TRBV1-201ENST00000476502 284 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 HMGN1P11-201ENST00000508668 303 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 AC008549.1-201ENST00000512900 643 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 MIR3160-1-201ENST00000577972 85 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 AP001330.4-201ENST00000604350 154 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 LARP7P1-201ENST00000605576 316 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 AC012409.4-201ENST00000612923 249 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 AL359547.2-201ENST00000615810 418 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 AC104260.1-201ENST00000616660 539 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 AL354685.2-201ENST00000448218 1447 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 AC032011.1-201ENST00000611703 1549 ntBASIC4.09□□□□□ -1.75
LIMCH1Q9UPQ0 TPTE2P4-201ENST00000258589 1605 ntBASIC4.09□□□□□ -1.76
LIMCH1Q9UPQ0 TNPO1P3-201ENST00000436471 2662 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 Y_RNA.231-201ENST00000364358 102 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 RNU6-1009P-201ENST00000390996 107 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 AL451054.2-201ENST00000420896 202 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 AL159169.1-201ENST00000421119 127 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 RPL7P46-201ENST00000425129 740 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 ERLEC1P1-201ENST00000433806 578 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 USP9YP8-201ENST00000441913 500 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 NOTCH2P1-201ENST00000443481 624 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 AL671855.1-201ENST00000446875 1203 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 FABP5P13-201ENST00000452144 328 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 CEACAMP4-201ENST00000457676 421 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 RPL9P32-201ENST00000464118 620 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 RPL21P8-201ENST00000465083 535 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 AC114781.4-201ENST00000513707 639 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 RNU6-927P-201ENST00000516199 100 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 AP004242.1-201ENST00000533701 349 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 AC008521.1-201ENST00000587471 187 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 MTND5P42-201ENST00000637720 498 ntBASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
LIMCH1Q9UPQ0 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 Y_RNA.70-201ENST00000362886 110 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 RNU6-190P-201ENST00000384154 102 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 MIR514A1-201ENST00000385133 98 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 RNU6-332P-201ENST00000391193 108 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 AC017083.1-201ENST00000428093 483 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 TXNP1-201ENST00000441872 371 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 RNU7-180P-201ENST00000459240 63 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 RPL23AP67-201ENST00000465341 474 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 RPL7P47-201ENST00000497299 556 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 HMGN1P12-201ENST00000499125 195 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 MTCO2P30-201ENST00000503662 364 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 AC117522.3-201ENST00000507974 584 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 MTND4P7-201ENST00000523876 130 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 AL137161.1-201ENST00000532231 390 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 AC005951.2-201ENST00000576282 495 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 MIR4424-201ENST00000585257 86 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 AL138889.2-201ENST00000603883 242 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 AC012531.5-201ENST00000611375 151 ntBASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
LIMCH1Q9UPQ0 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms