Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 PSMA2P1-201ENST00000526365 646 ntBASIC3.3□□□□□ -1.88
SIX4Q9UIU6 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.3□□□□□ -1.88
SIX4Q9UIU6 AL157687.1-201ENST00000554853 619 ntBASIC3.3□□□□□ -1.88
SIX4Q9UIU6 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.3□□□□□ -1.88
SIX4Q9UIU6 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC3.3□□□□□ -1.88
SIX4Q9UIU6 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.3□□□□□ -1.88
SIX4Q9UIU6 AC025678.1-201ENST00000567861 338 ntBASIC3.3□□□□□ -1.88
SIX4Q9UIU6 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.3□□□□□ -1.88
SIX4Q9UIU6 MIR3690-201ENST00000580266 75 ntBASIC3.3□□□□□ -1.88
SIX4Q9UIU6 AC105224.1-201ENST00000587055 421 ntBASIC3.3□□□□□ -1.88
SIX4Q9UIU6 AC098848.2-201ENST00000588023 330 ntBASIC3.3□□□□□ -1.88
SIX4Q9UIU6 AP000907.4-201ENST00000604143 237 ntBASIC3.3□□□□□ -1.88
SIX4Q9UIU6 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SIX4Q9UIU6 AC093838.1-201ENST00000613014 469 ntBASIC3.3□□□□□ -1.88
SIX4Q9UIU6 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
SIX4Q9UIU6 MIR6130-201ENST00000619419 109 ntBASIC3.3□□□□□ -1.88
SIX4Q9UIU6 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.3□□□□□ -1.88
SIX4Q9UIU6 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.3□□□□□ -1.88
SIX4Q9UIU6 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
SIX4Q9UIU6 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
SIX4Q9UIU6 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
SIX4Q9UIU6 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SIX4Q9UIU6 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.3□□□□□ -1.88
SIX4Q9UIU6 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 MIR422A-201ENST00000362286 90 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 RNU6-74P-201ENST00000384235 107 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 MIR128-1-201ENST00000384921 82 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 RNU6-882P-201ENST00000391025 103 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 SNORA48.5-201ENST00000391143 135 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 RNU4-65P-201ENST00000410473 140 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 Y_RNA.604-201ENST00000410574 102 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 USP9YP6-201ENST00000413550 854 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 USP9YP27-201ENST00000418455 438 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AC099677.1-201ENST00000420575 175 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 RPL7P54-201ENST00000438336 674 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AL353572.1-201ENST00000442490 417 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AL162389.1-201ENST00000449233 177 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AC140076.1-201ENST00000449897 361 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 SNRPGP6-201ENST00000451124 220 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 RPL23AP14-201ENST00000468281 468 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 RPL27AP5-201ENST00000469428 449 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 RN7SL20P-201ENST00000488827 297 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 RNA5SP341-201ENST00000516261 117 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 RNU6-410P-201ENST00000517006 107 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AC109635.3-201ENST00000529536 185 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AC104383.1-201ENST00000530297 370 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AC018630.1-201ENST00000541376 925 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AC007621.1-201ENST00000604544 437 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AL121992.2-201ENST00000606262 256 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AP002360.4-201ENST00000606980 481 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AC093788.1-201ENST00000609356 927 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 ATP5A1P2-202ENST00000616464 443 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 MIR1321-201ENST00000637766 79 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AL353743.1-202ENST00000431724 1695 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
SIX4Q9UIU6 RIOK3P1-201ENST00000418778 1528 ntBASIC3.29□□□□□ -1.88
SIX4Q9UIU6 AL672296.1-201ENST00000427780 2158 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AL136164.4-201ENST00000625013 2135 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 RNU6-600P-201ENST00000362524 99 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 RNU6-1097P-201ENST00000363586 107 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 Y_RNA.367-201ENST00000365544 101 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 RNU6-1074P-201ENST00000383995 104 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 RNY3P14-201ENST00000384309 102 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 RNU2-71P-201ENST00000411395 189 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AC245291.1-201ENST00000419501 328 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 SDCBPP3-201ENST00000419629 891 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AC090774.1-201ENST00000435925 246 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 HMGB1P31-201ENST00000437242 427 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AC004866.2-201ENST00000438285 481 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 S100A11P2-201ENST00000467589 312 ntBASIC3.28□□□□□ -1.88
SIX4Q9UIU6 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SIX4Q9UIU6 AC093278.1-201ENST00000494700 600 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms