Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RANP9-201ENST00000519957 271 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 AP005639.2-201ENST00000527592 928 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 AC012182.1-201ENST00000570133 895 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 MIR4790-201ENST00000577799 79 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 AC023043.2-201ENST00000589678 1026 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 AC022418.1-201ENST00000624118 445 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 DEFB108F-201ENST00000344638 222 ntBASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 RNU6-1297P-201ENST00000384415 104 ntBASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 RPS4XP7-201ENST00000406274 780 ntBASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 AF228730.4-201ENST00000421457 183 ntBASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 RPL21P109-201ENST00000422213 475 ntBASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 TXNP1-201ENST00000441872 371 ntBASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 AC107399.1-201ENST00000451226 265 ntBASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 snoU13.4-201ENST00000458916 104 ntBASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 AC087884.1-201ENST00000469738 328 ntBASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 AC069499.1-201ENST00000489433 509 ntBASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 RNA5SP454-201ENST00000517231 127 ntBASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 MIR5692C1-201ENST00000585309 91 ntBASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 LINC00901.1-201ENST00000617252 152 ntBASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 AL354798.1-201ENST00000622505 329 ntBASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 MTND4LP32-201ENST00000636111 270 ntBASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.2□□□□□ -1.74
PCIF1Q9H4Z3 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 Y_RNA.135-201ENST00000363439 95 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 SNORA63-201ENST00000363450 132 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 Y_RNA.212-201ENST00000364177 102 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 RN7SKP280-201ENST00000364196 304 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 RNU6-1181P-201ENST00000384191 106 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 RN7SKP158-201ENST00000410453 326 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 AL451062.2-201ENST00000427515 271 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 AC005534.2-201ENST00000431047 433 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 MTCYBP6-201ENST00000441810 138 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 AC008264.1-201ENST00000447612 367 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 RPL7P5-201ENST00000471472 736 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 AC078817.1-201ENST00000492623 435 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 AC078918.1-201ENST00000498515 228 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 MTND5P5-201ENST00000503764 376 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 SUMO2P6-201ENST00000505273 288 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 APOOP4-201ENST00000513530 597 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 RNA5SP208-201ENST00000516156 78 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 RNU6-1069P-201ENST00000516612 133 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 SCARNA14-201ENST00000516903 136 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 IL7-206ENST00000520269 456 ntTSL 3 BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 AC090877.1-201ENST00000561418 344 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 AC002545.1-201ENST00000592511 181 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 AL627309.6-201ENST00000606857 840 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 AL355810.1-201ENST00000614629 552 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 AC126177.8-201ENST00000618339 1015 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 AC067931.1-201ENST00000624190 671 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 ZNF285B-201ENST00000561698 1767 ntBASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
PCIF1Q9H4Z3 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.18□□□□□ -1.74
PCIF1Q9H4Z3 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms