Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.66□□□□□ -1.98
LIME1Q9H400 TRAV37-201ENST00000553906 342 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.66□□□□□ -1.98
LIME1Q9H400 TRAV28-201ENST00000557548 323 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.66□□□□□ -1.98
LIME1Q9H400 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.66□□□□□ -1.98
LIME1Q9H400 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.66□□□□□ -1.98
LIME1Q9H400 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.66□□□□□ -1.98
LIME1Q9H400 NRBF2P1-201ENST00000587407 859 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 AC064807.4-201ENST00000607201 407 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.66□□□□□ -1.98
LIME1Q9H400 MIR6076-201ENST00000617521 113 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 AC027309.3-201ENST00000623419 351 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
LIME1Q9H400 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.66□□□□□ -1.98
LIME1Q9H400 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
LIME1Q9H400 AC007785.2-201ENST00000598627 1916 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
LIME1Q9H400 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
LIME1Q9H400 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.65□□□□□ -1.98
LIME1Q9H400 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
LIME1Q9H400 RNU5E-6P-201ENST00000365574 115 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.65□□□□□ -1.99
LIME1Q9H400 SNORD15B-201ENST00000384714 146 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 MRPL42P2-201ENST00000403169 426 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 FAT1P1-201ENST00000406588 507 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 RNU2-36P-201ENST00000410361 191 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 BTF3L4P1-201ENST00000413813 468 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 AC245054.2-201ENST00000415639 319 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.65□□□□□ -1.99
LIME1Q9H400 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.65□□□□□ -1.99
LIME1Q9H400 SNRPEP4-201ENST00000435815 279 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 HIGD1AP11-201ENST00000438361 280 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 AC009969.1-201ENST00000438726 172 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 HMGB3P12-201ENST00000438745 556 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC2.65□□□□□ -1.99
LIME1Q9H400 Z82210.1-201ENST00000440037 231 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.65□□□□□ -1.99
LIME1Q9H400 AC244505.5-201ENST00000443639 207 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.65□□□□□ -1.99
LIME1Q9H400 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.65□□□□□ -1.99
LIME1Q9H400 SNORD97-201ENST00000459187 142 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 AC087588.1-201ENST00000462203 316 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.65□□□□□ -1.99
LIME1Q9H400 AC092185.1-201ENST00000491371 97 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 MTND4LP22-201ENST00000508209 276 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 AC114797.1-201ENST00000514003 728 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 SNORA18.6-201ENST00000516792 115 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 AC022616.3-201ENST00000523940 148 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 AC011979.2-201ENST00000527568 352 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 AC128657.1-201ENST00000549459 145 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 AC024909.2-201ENST00000553035 286 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC2.65□□□□□ -1.99
LIME1Q9H400 AMZ2P1-203ENST00000565833 850 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 AC006362.1-201ENST00000567392 174 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.65□□□□□ -1.99
LIME1Q9H400 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.65□□□□□ -1.99
LIME1Q9H400 ELOCP29-201ENST00000588193 334 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 AC040904.1-201ENST00000590850 223 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 AC015871.2-201ENST00000603605 948 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.65□□□□□ -1.99
LIME1Q9H400 AC008962.1-201ENST00000605729 304 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 AC068831.7-201ENST00000616954 363 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.65□□□□□ -1.99
LIME1Q9H400 MTND1P37-201ENST00000636562 264 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
LIME1Q9H400 CR848007.1-201ENST00000442354 1699 ntBASIC2.65□□□□□ -1.99
LIME1Q9H400 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
LIME1Q9H400 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
LIME1Q9H400 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.64□□□□□ -1.99
LIME1Q9H400 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.64□□□□□ -1.99
LIME1Q9H400 AC093908.1-201ENST00000623125 8092 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 AC022336.2-201ENST00000568966 2538 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC2.64□□□□□ -1.99
LIME1Q9H400 MIR22-201ENST00000362190 85 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 RNU6-1119P-201ENST00000384349 108 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
LIME1Q9H400 RPS3AP36-201ENST00000398190 775 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 AL445529.1-201ENST00000398713 389 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 DEFB108C-201ENST00000400154 252 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 AL139397.2-201ENST00000404529 772 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 RNU6-1077P-201ENST00000410506 102 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 RNA5SP38-201ENST00000410750 119 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 TMEM167AP1-201ENST00000423409 219 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.64□□□□□ -1.99
LIME1Q9H400 AC007283.2-201ENST00000424739 197 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 VN1R108P-201ENST00000431580 830 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.64□□□□□ -1.99
LIME1Q9H400 AC104850.1-201ENST00000435940 476 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 HMGN2P20-201ENST00000437531 273 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.64□□□□□ -1.99
LIME1Q9H400 MTND1P27-201ENST00000451117 902 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 UQCRHP3-201ENST00000451503 251 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 MTND2P24-201ENST00000453434 806 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 TPT1P7-201ENST00000458300 517 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.64□□□□□ -1.99
LIME1Q9H400 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.64□□□□□ -1.99
LIME1Q9H400 MTCO3P28-201ENST00000513351 515 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 RN7SKP272-201ENST00000516988 232 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms