Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 AC245054.1-201ENST00000420944 258 ntBASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 RPL7L1P10-201ENST00000427790 463 ntBASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 AC079780.1-201ENST00000428259 207 ntBASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 AL162395.1-201ENST00000457882 422 ntBASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 RPL23AP11-201ENST00000475260 469 ntBASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 RN7SL504P-201ENST00000494496 287 ntBASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 AC091885.1-201ENST00000506658 268 ntBASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 AC104806.1-201ENST00000508720 308 ntBASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 AC022968.1-201ENST00000567372 442 ntBASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 RPL23AP84-201ENST00000571193 464 ntBASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 BDH2P1-201ENST00000602288 736 ntBASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
SMC1BQ8NDV3 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 SNORA5B-201ENST00000363786 132 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 Y_RNA.231-201ENST00000364358 102 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 Y_RNA.576-201ENST00000384781 102 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 SRIP2-201ENST00000428470 166 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 RPL26P6-201ENST00000440913 438 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 AC093019.1-201ENST00000443135 252 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 NEFMP1-201ENST00000443423 1006 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 HMGN2P21-201ENST00000447764 270 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 FABP5P13-201ENST00000452144 328 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 MTND3P16-201ENST00000452205 344 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 SUMO2P20-201ENST00000520803 283 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 AC109635.4-202ENST00000531666 412 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 MIR4276-201ENST00000584832 70 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 AC174048.1-201ENST00000603389 144 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 MIR7106-201ENST00000612419 65 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 AC093913.1-201ENST00000614178 329 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 AL359314.1-201ENST00000616913 261 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 AL360181.4-201ENST00000621752 134 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 LINC02471-203ENST00000641941 4752 ntBASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
SMC1BQ8NDV3 ZNF826P-207ENST00000622273 1910 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 AC008725.1-201ENST00000605123 2263 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 RNU5A-1-201ENST00000362698 116 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 RNU4-66P-201ENST00000365199 138 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 MT-TD-201ENST00000387419 68 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 RNU6-332P-201ENST00000391193 108 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 AL162578.1-201ENST00000406202 378 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 RPL5P18-201ENST00000406671 891 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 SNORA3C-201ENST00000408792 125 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 RNU4-46P-201ENST00000410818 138 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 DUTP6-201ENST00000425573 462 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 ERLEC1P1-201ENST00000433806 578 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 MTND4LP16-201ENST00000440828 295 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 SDAD1P2-201ENST00000441308 2028 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 ELOCP23-201ENST00000452014 332 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 RPS24P6-201ENST00000452670 400 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 AC108860.1-201ENST00000484521 383 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 AC106872.2-201ENST00000494303 480 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 MIR5680-201ENST00000577577 84 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 AC010928.3-201ENST00000587712 541 ntBASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
SMC1BQ8NDV3 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 219.5 ms