Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC104164.3-201ENST00000467363 1258 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 RPL31P60-201ENST00000478450 367 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 AC023790.1-201ENST00000482174 347 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.55□□□□□ -2.16
USP54Q70EL1 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.55□□□□□ -2.16
USP54Q70EL1 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC1.55□□□□□ -2.16
USP54Q70EL1 MIR5571-201ENST00000577998 113 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 MIR3609-201ENST00000582661 80 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 AC011712.1-201ENST00000588959 234 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC1.55□□□□□ -2.16
USP54Q70EL1 AC073592.7-201ENST00000623659 507 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 AC012640.5-201ENST00000623897 319 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 AC017104.5-201ENST00000637647 639 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC1.54□□□□□ -2.16
USP54Q70EL1 RNU6-1151P-201ENST00000384684 107 ntBASIC1.54□□□□□ -2.16
USP54Q70EL1 SNORD23.1-201ENST00000408212 104 ntBASIC1.54□□□□□ -2.16
USP54Q70EL1 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC1.54□□□□□ -2.16
USP54Q70EL1 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC1.54□□□□□ -2.16
USP54Q70EL1 SDCBPP1-201ENST00000440192 890 ntBASIC1.54□□□□□ -2.16
USP54Q70EL1 MTND4LP16-201ENST00000440828 295 ntBASIC1.54□□□□□ -2.16
USP54Q70EL1 SNRPFP3-201ENST00000457792 225 ntBASIC1.54□□□□□ -2.16
USP54Q70EL1 RNU7-26P-201ENST00000458980 63 ntBASIC1.54□□□□□ -2.16
USP54Q70EL1 AC087343.1-201ENST00000477341 475 ntBASIC1.54□□□□□ -2.16
USP54Q70EL1 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.54□□□□□ -2.16
USP54Q70EL1 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC1.54□□□□□ -2.16
USP54Q70EL1 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC1.54□□□□□ -2.16
USP54Q70EL1 AC005730.3-201ENST00000583067 366 ntBASIC1.54□□□□□ -2.16
USP54Q70EL1 MIR98-201ENST00000606724 119 ntBASIC1.54□□□□□ -2.16
USP54Q70EL1 AC021851.1-201ENST00000608537 1082 ntBASIC1.54□□□□□ -2.16
USP54Q70EL1 AC018926.3-201ENST00000618841 406 ntBASIC1.54□□□□□ -2.16
USP54Q70EL1 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
USP54Q70EL1 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
USP54Q70EL1 SNORA62.1-201ENST00000364287 154 ntBASIC1.53□□□□□ -2.16
USP54Q70EL1 SNORA46.1-201ENST00000391069 153 ntBASIC1.53□□□□□ -2.16
USP54Q70EL1 MIR1285-1-201ENST00000408593 84 ntBASIC1.53□□□□□ -2.16
USP54Q70EL1 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC1.53□□□□□ -2.16
USP54Q70EL1 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.53□□□□□ -2.16
USP54Q70EL1 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.53□□□□□ -2.16
USP54Q70EL1 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC1.53□□□□□ -2.16
USP54Q70EL1 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC1.53□□□□□ -2.16
USP54Q70EL1 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC1.53□□□□□ -2.16
USP54Q70EL1 KLRA1P-201ENST00000503499 986 ntBASIC1.53□□□□□ -2.16
USP54Q70EL1 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC1.53□□□□□ -2.16
USP54Q70EL1 AC079610.2-201ENST00000604818 690 ntBASIC1.53□□□□□ -2.16
USP54Q70EL1 AL162373.1-201ENST00000620433 407 ntBASIC1.53□□□□□ -2.16
USP54Q70EL1 AL390862.1-201ENST00000635467 1469 ntBASIC1.53□□□□□ -2.17
USP54Q70EL1 AL512504.1-201ENST00000415494 778 ntBASIC1.52□□□□□ -2.17
USP54Q70EL1 EZH2P1-201ENST00000431167 291 ntBASIC1.52□□□□□ -2.17
USP54Q70EL1 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC1.52□□□□□ -2.17
USP54Q70EL1 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.52□□□□□ -2.17
USP54Q70EL1 UBE2L4-201ENST00000587688 464 ntBASIC1.52□□□□□ -2.17
USP54Q70EL1 AC025588.3-201ENST00000604182 274 ntBASIC1.52□□□□□ -2.17
USP54Q70EL1 AC004852.3-201ENST00000614131 326 ntBASIC1.52□□□□□ -2.17
USP54Q70EL1 AC073968.1-201ENST00000618594 637 ntBASIC1.52□□□□□ -2.17
USP54Q70EL1 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC1.52□□□□□ -2.17
USP54Q70EL1 AC123912.3-201ENST00000600907 1367 ntBASIC1.52□□□□□ -2.17
USP54Q70EL1 DEFB108F-201ENST00000344638 222 ntBASIC1.51□□□□□ -2.17
USP54Q70EL1 CYCSP33-201ENST00000414485 327 ntBASIC1.51□□□□□ -2.17
USP54Q70EL1 LINC01347-201ENST00000417964 355 ntBASIC1.51□□□□□ -2.17
USP54Q70EL1 AC092573.2-201ENST00000434546 243 ntBASIC1.51□□□□□ -2.17
USP54Q70EL1 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.51□□□□□ -2.17
USP54Q70EL1 EIF4EP3-201ENST00000498782 656 ntBASIC1.51□□□□□ -2.17
USP54Q70EL1 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC1.51□□□□□ -2.17
USP54Q70EL1 DEFB108D-201ENST00000527787 222 ntBASIC1.51□□□□□ -2.17
USP54Q70EL1 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC1.51□□□□□ -2.17
USP54Q70EL1 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC1.51□□□□□ -2.17
USP54Q70EL1 AC021749.1-201ENST00000604322 607 ntBASIC1.51□□□□□ -2.17
USP54Q70EL1 AL161423.1-201ENST00000613700 262 ntBASIC1.51□□□□□ -2.17
USP54Q70EL1 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC1.51□□□□□ -2.17
USP54Q70EL1 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC1.51□□□□□ -2.17
USP54Q70EL1 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
USP54Q70EL1 Y_RNA.205-201ENST00000364128 113 ntBASIC1.51□□□□□ -2.17
USP54Q70EL1 RNU1-148P-201ENST00000384472 162 ntBASIC1.51□□□□□ -2.17
USP54Q70EL1 U3.20-201ENST00000390909 217 ntBASIC1.51□□□□□ -2.17
USP54Q70EL1 RNU1-139P-201ENST00000391307 165 ntBASIC1.51□□□□□ -2.17
USP54Q70EL1 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC1.51□□□□□ -2.17
USP54Q70EL1 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.51□□□□□ -2.17
USP54Q70EL1 AC078857.1-201ENST00000469870 667 ntBASIC1.51□□□□□ -2.17
USP54Q70EL1 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.51□□□□□ -2.17
USP54Q70EL1 AC011260.1-201ENST00000578420 472 ntBASIC1.51□□□□□ -2.17
USP54Q70EL1 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.51□□□□□ -2.17
USP54Q70EL1 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC1.51□□□□□ -2.17
USP54Q70EL1 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
USP54Q70EL1 MFSD8-213ENST00000641134 1327 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 MIR373-201ENST00000362273 69 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 Y_RNA.374-201ENST00000365606 101 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC1.5□□□□□ -2.17
USP54Q70EL1 Z86062.1-201ENST00000406773 777 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 TPMTP3-201ENST00000411928 735 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 AC079780.1-201ENST00000428259 207 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 AL121601.2-201ENST00000438019 707 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 AL714022.1-201ENST00000439897 151 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 AL360221.1-201ENST00000445989 335 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 AC104073.1-201ENST00000451988 151 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 AC116337.2-201ENST00000477662 156 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC1.5□□□□□ -2.17
USP54Q70EL1 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC1.5□□□□□ -2.17
USP54Q70EL1 RNU6-1095P-201ENST00000516148 108 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 SNORA31.13-201ENST00000516624 135 ntBASIC1.5□□□□□ -2.17
USP54Q70EL1 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms