Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 MTCO1P18-201ENST00000455518 1419 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 MIR96-201ENST00000362288 78 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 RNU4-42P-201ENST00000364738 142 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 RNU6-217P-201ENST00000384164 104 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 AP002784.2-201ENST00000397300 549 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 TRGVB-201ENST00000453257 471 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 RPL21P134-201ENST00000453468 483 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 ANKRD26P4-201ENST00000455755 950 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 AC055731.1-201ENST00000474387 401 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 HIGD1AP6-201ENST00000521833 279 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 AL645939.4-201ENST00000604495 135 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 MIR1264-201ENST00000616374 69 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 AL353770.2-201ENST00000620024 78 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 AL159972.1-201ENST00000625150 448 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 MIR7157-201ENST00000635801 60 ntBASIC1.35□□□□□ -2.19
CHD3Q12873 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.34□□□□□ -2.19
CHD3Q12873 AC083799.1-201ENST00000366451 910 ntBASIC1.34□□□□□ -2.19
CHD3Q12873 MIR325-201ENST00000385260 98 ntBASIC1.34□□□□□ -2.19
CHD3Q12873 SSXP10-201ENST00000402595 565 ntBASIC1.34□□□□□ -2.19
CHD3Q12873 AC012497.1-201ENST00000429392 575 ntBASIC1.34□□□□□ -2.19
CHD3Q12873 SNRPGP6-201ENST00000451124 220 ntBASIC1.34□□□□□ -2.19
CHD3Q12873 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
CHD3Q12873 RPS29P23-201ENST00000458635 123 ntBASIC1.34□□□□□ -2.19
CHD3Q12873 AC027575.1-201ENST00000481064 460 ntBASIC1.34□□□□□ -2.19
CHD3Q12873 AC069528.1-202ENST00000482888 637 ntBASIC1.34□□□□□ -2.19
CHD3Q12873 RPS27P26-201ENST00000494583 239 ntBASIC1.34□□□□□ -2.19
CHD3Q12873 AC020699.1-201ENST00000505161 445 ntBASIC1.34□□□□□ -2.19
CHD3Q12873 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC1.34□□□□□ -2.19
CHD3Q12873 RNU6-1256P-201ENST00000516539 103 ntBASIC1.34□□□□□ -2.19
CHD3Q12873 AC104997.1-201ENST00000519761 717 ntBASIC1.34□□□□□ -2.19
CHD3Q12873 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC1.34□□□□□ -2.19
CHD3Q12873 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.34□□□□□ -2.19
CHD3Q12873 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.34□□□□□ -2.19
CHD3Q12873 OR4K8P-201ENST00000578842 1048 ntBASIC1.34□□□□□ -2.19
CHD3Q12873 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC1.34□□□□□ -2.19
CHD3Q12873 AC007038.2-201ENST00000608095 740 ntBASIC1.34□□□□□ -2.19
CHD3Q12873 AC091304.6-201ENST00000619761 202 ntBASIC1.34□□□□□ -2.19
CHD3Q12873 AC008555.8-201ENST00000623602 2168 ntBASIC1.34□□□□□ -2.19
CHD3Q12873 TPTE2P4-201ENST00000258589 1605 ntBASIC1.34□□□□□ -2.2
CHD3Q12873 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.34□□□□□ -2.2
CHD3Q12873 ZBTB8OSP1-201ENST00000342688 498 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 U8.3-201ENST00000363321 132 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 SNORD48-201ENST00000364953 64 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 MIR525-201ENST00000384978 85 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 MOB4-205ENST00000409916 829 ntTSL 3 BASIC1.33□□□□□ -2.2
CHD3Q12873 SEPT2P1-201ENST00000419651 180 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 HMGB1P9-201ENST00000429856 646 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC1.33□□□□□ -2.2
CHD3Q12873 AC007395.1-201ENST00000451333 677 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 GTF2IP12-201ENST00000456547 356 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 AC022483.1-201ENST00000514020 567 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 AC019176.1-201ENST00000518519 225 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.33□□□□□ -2.2
CHD3Q12873 FAM60BP-201ENST00000578364 658 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 HMGN2P15-201ENST00000585707 270 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 GAS5-AS1-201ENST00000602767 694 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 AC025165.5-201ENST00000602802 578 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC1.33□□□□□ -2.2
CHD3Q12873 SUMO2P14-201ENST00000604488 293 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 AP002826.1-201ENST00000608835 315 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 MIR7974-201ENST00000615835 79 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 AC109809.1-201ENST00000619665 545 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC1.33□□□□□ -2.2
CHD3Q12873 AC080100.1-201ENST00000624239 5356 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.33□□□□□ -2.2
CHD3Q12873 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC1.33□□□□□ -2.2
CHD3Q12873 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC1.33□□□□□ -2.2
CHD3Q12873 RNU1-42P-201ENST00000364033 160 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 RNU6-374P-201ENST00000364146 108 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 RNU6-342P-201ENST00000384521 104 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC1.33□□□□□ -2.2
CHD3Q12873 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC1.33□□□□□ -2.2
CHD3Q12873 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.33□□□□□ -2.2
CHD3Q12873 PAICSP7-201ENST00000419829 962 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.33□□□□□ -2.2
CHD3Q12873 AC096571.1-202ENST00000506634 735 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.33□□□□□ -2.2
CHD3Q12873 AC093752.1-206ENST00000511823 336 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.33□□□□□ -2.2
CHD3Q12873 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC1.33□□□□□ -2.2
CHD3Q12873 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.33□□□□□ -2.2
CHD3Q12873 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.33□□□□□ -2.2
CHD3Q12873 AL078603.1-201ENST00000603824 313 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC1.33□□□□□ -2.2
CHD3Q12873 MTND5P10-201ENST00000603719 1809 ntBASIC1.33□□□□□ -2.2
CHD3Q12873 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
CHD3Q12873 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
CHD3Q12873 SNORA16B-201ENST00000364674 135 ntBASIC1.32□□□□□ -2.2
CHD3Q12873 SNORD114-22-201ENST00000365423 72 ntBASIC1.32□□□□□ -2.2
CHD3Q12873 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
CHD3Q12873 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
CHD3Q12873 RPL27AP8-201ENST00000424277 446 ntBASIC1.32□□□□□ -2.2
CHD3Q12873 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC1.32□□□□□ -2.2
CHD3Q12873 UBE2V2P3-201ENST00000433562 437 ntBASIC1.32□□□□□ -2.2
CHD3Q12873 MTND4LP16-201ENST00000440828 295 ntBASIC1.32□□□□□ -2.2
CHD3Q12873 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC1.32□□□□□ -2.2
CHD3Q12873 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC1.32□□□□□ -2.2
CHD3Q12873 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC1.32□□□□□ -2.2
CHD3Q12873 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC1.32□□□□□ -2.2
CHD3Q12873 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms