Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC010378.1-201ENST00000619270 362 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC3.85□□□□□ -1.79
COL4A3Q01955 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A3Q01955 AC011266.1-201ENST00000624119 3569 ntBASIC3.85□□□□□ -1.79
COL4A3Q01955 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC3.85□□□□□ -1.79
COL4A3Q01955 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A3Q01955 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A3Q01955 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC3.85□□□□□ -1.79
COL4A3Q01955 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A3Q01955 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC3.85□□□□□ -1.79
COL4A3Q01955 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
COL4A3Q01955 Y_RNA.176-201ENST00000363815 109 ntBASIC3.84□□□□□ -1.79
COL4A3Q01955 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL4A3Q01955 MT-TG-201ENST00000387429 68 ntBASIC3.84□□□□□ -1.79
COL4A3Q01955 Y_RNA.618-201ENST00000410949 107 ntBASIC3.84□□□□□ -1.79
COL4A3Q01955 Y_RNA.646-201ENST00000410980 101 ntBASIC3.84□□□□□ -1.79
COL4A3Q01955 RPL7AP73-201ENST00000413490 353 ntBASIC3.84□□□□□ -1.79
COL4A3Q01955 AL158156.1-201ENST00000422509 473 ntBASIC3.84□□□□□ -1.79
COL4A3Q01955 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.84□□□□□ -1.79
COL4A3Q01955 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC3.84□□□□□ -1.79
COL4A3Q01955 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.84□□□□□ -1.79
COL4A3Q01955 RPL21P93-201ENST00000480465 489 ntBASIC3.84□□□□□ -1.79
COL4A3Q01955 HIGD1AP13-201ENST00000509878 289 ntBASIC3.84□□□□□ -1.79
COL4A3Q01955 MTCO3P23-201ENST00000561363 289 ntBASIC3.84□□□□□ -1.79
COL4A3Q01955 AC007566.2-201ENST00000603642 413 ntBASIC3.84□□□□□ -1.79
COL4A3Q01955 AL139395.1-201ENST00000603662 160 ntBASIC3.84□□□□□ -1.79
COL4A3Q01955 AC013412.1-201ENST00000610687 192 ntBASIC3.84□□□□□ -1.79
COL4A3Q01955 AL442067.1-201ENST00000613261 223 ntBASIC3.84□□□□□ -1.79
COL4A3Q01955 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.84□□□□□ -1.79
COL4A3Q01955 PISRT1.1-201ENST00000616930 107 ntBASIC3.84□□□□□ -1.79
COL4A3Q01955 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.84□□□□□ -1.79
COL4A3Q01955 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
COL4A3Q01955 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.84□□□□□ -1.79
COL4A3Q01955 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL4A3Q01955 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
COL4A3Q01955 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
COL4A3Q01955 XIAPP3-201ENST00000312918 795 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 RNU6-1040P-201ENST00000383974 107 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 Y_RNA.557-201ENST00000384680 107 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.84□□□□□ -1.8
COL4A3Q01955 RNU6-603P-201ENST00000411403 107 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 RPL31P2-201ENST00000413849 377 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 RPL7P10-201ENST00000417407 739 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.84□□□□□ -1.8
COL4A3Q01955 CALM2P2-201ENST00000428512 440 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 USP9YP16-201ENST00000430287 407 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 AC073063.1-201ENST00000434352 607 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.84□□□□□ -1.8
COL4A3Q01955 AL731563.1-201ENST00000442202 214 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 USP9YP23-201ENST00000455085 407 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.84□□□□□ -1.8
COL4A3Q01955 RN7SL807P-201ENST00000470923 297 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 AC015911.1-201ENST00000495111 156 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.84□□□□□ -1.8
COL4A3Q01955 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC3.84□□□□□ -1.8
COL4A3Q01955 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.84□□□□□ -1.8
COL4A3Q01955 AL161670.1-201ENST00000554348 137 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 AL121576.1-201ENST00000556055 276 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 MIR4293-201ENST00000584305 78 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.84□□□□□ -1.8
COL4A3Q01955 AC015813.4-201ENST00000610469 179 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 AC006157.1-201ENST00000611750 366 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 AL355365.1-201ENST00000616480 294 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 AL162373.1-201ENST00000620433 407 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 AC098657.3-201ENST00000620434 263 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 AC092608.2-201ENST00000624427 218 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.84□□□□□ -1.8
COL4A3Q01955 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC3.84□□□□□ -1.8
COL4A3Q01955 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
COL4A3Q01955 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
COL4A3Q01955 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.8
COL4A3Q01955 AC090337.1-201ENST00000579651 2074 ntBASIC3.84□□□□□ -1.8
COL4A3Q01955 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
COL4A3Q01955 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL4A3Q01955 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
COL4A3Q01955 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL4A3Q01955 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL4A3Q01955 AC010300.1-201ENST00000600671 5134 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
COL4A3Q01955 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL4A3Q01955 Y_RNA.149-201ENST00000363558 117 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 Y_RNA.188-201ENST00000363952 111 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 SNORD74.4-201ENST00000364129 80 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 RNU6-593P-201ENST00000364716 112 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL4A3Q01955 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL4A3Q01955 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.83□□□□□ -1.8
COL4A3Q01955 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.83□□□□□ -1.8
COL4A3Q01955 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.83□□□□□ -1.8
COL4A3Q01955 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.83□□□□□ -1.8
COL4A3Q01955 RPS15AP27-201ENST00000449183 343 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 MIR2053-201ENST00000459295 91 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 AC010469.1-201ENST00000463864 576 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 AC025518.1-201ENST00000479856 347 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.83□□□□□ -1.8
COL4A3Q01955 RNU6-123P-201ENST00000516163 102 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.83□□□□□ -1.8
COL4A3Q01955 DEFB108D-201ENST00000527787 222 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 AP002404.1-201ENST00000532005 451 ntBASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 131.2 ms