Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC069528.1-202ENST00000482888 637 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 AC092436.1-201ENST00000506450 503 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 SNORD19.2-201ENST00000516978 73 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC1.18□□□□□ -2.22
FOXA3P55318 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC1.18□□□□□ -2.22
FOXA3P55318 AC093519.1-201ENST00000566109 298 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 AC023824.3-201ENST00000569003 562 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.18□□□□□ -2.22
FOXA3P55318 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC1.18□□□□□ -2.22
FOXA3P55318 AC136601.2-201ENST00000604356 474 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.18□□□□□ -2.22
FOXA3P55318 AL138478.1-201ENST00000612252 832 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 AC064859.1-201ENST00000624741 174 ntBASIC1.18□□□□□ -2.22
FOXA3P55318 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.17□□□□□ -2.22
FOXA3P55318 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
FOXA3P55318 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
FOXA3P55318 RNU1-42P-201ENST00000364033 160 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 SNORA40.18-201ENST00000391200 128 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 RPL23AP29-201ENST00000397284 453 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 SNORA3.2-201ENST00000408221 125 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 RNU6-955P-201ENST00000410497 104 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 RNA5SP508-201ENST00000411327 119 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.17□□□□□ -2.22
FOXA3P55318 BX510359.4-201ENST00000423750 193 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC1.17□□□□□ -2.22
FOXA3P55318 AC007919.1-201ENST00000429380 217 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 AC241584.1-201ENST00000438469 1241 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC1.17□□□□□ -2.22
FOXA3P55318 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.17□□□□□ -2.22
FOXA3P55318 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC1.17□□□□□ -2.22
FOXA3P55318 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC1.17□□□□□ -2.22
FOXA3P55318 SUMO2P2-201ENST00000456482 255 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 RPS27AP10-201ENST00000496103 208 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC1.17□□□□□ -2.22
FOXA3P55318 AC069306.1-201ENST00000507006 843 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC1.17□□□□□ -2.22
FOXA3P55318 AC048346.1-201ENST00000510247 144 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC1.17□□□□□ -2.22
FOXA3P55318 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC1.17□□□□□ -2.22
FOXA3P55318 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.17□□□□□ -2.22
FOXA3P55318 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.17□□□□□ -2.22
FOXA3P55318 AP005597.4-201ENST00000526762 229 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC1.17□□□□□ -2.22
FOXA3P55318 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC1.17□□□□□ -2.22
FOXA3P55318 AC012414.2-201ENST00000559474 187 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 AC233702.2-202ENST00000562547 291 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 AC022254.1-201ENST00000567857 235 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 AC009233.1-201ENST00000616477 371 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 AL590808.1-201ENST00000618696 141 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 AC091953.2-201ENST00000623979 160 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 MTND1P37-201ENST00000636562 264 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
FOXA3P55318 ZNF876P-202ENST00000398732 1485 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 MTND5P29-201ENST00000458676 1807 ntBASIC1.17□□□□□ -2.22
FOXA3P55318 RNU1-62P-201ENST00000362599 164 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 RNA5SP240-201ENST00000365355 128 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC1.16□□□□□ -2.22
FOXA3P55318 RNU6-253P-201ENST00000384730 105 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 MIR518A2-201ENST00000384966 87 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 RNA5SP212-201ENST00000391223 107 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 RNU6-516P-201ENST00000411381 104 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.16□□□□□ -2.22
FOXA3P55318 AC019178.2-201ENST00000423595 505 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 Z93242.1-201ENST00000427102 353 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 AC008850.1-201ENST00000427546 362 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC1.16□□□□□ -2.22
FOXA3P55318 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC1.16□□□□□ -2.22
FOXA3P55318 MTND2P29-201ENST00000438595 412 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 RPL7P36-201ENST00000444633 681 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 AL357134.1-201ENST00000445848 426 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 AL096803.2-201ENST00000450032 677 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 AL353691.1-201ENST00000451332 387 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC1.16□□□□□ -2.22
FOXA3P55318 AC005410.1-202ENST00000460347 485 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 RPL30P9-201ENST00000465586 330 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 AC017007.3-201ENST00000479865 435 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 AC109471.1-201ENST00000511631 612 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 AC008549.1-201ENST00000512900 643 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.16□□□□□ -2.22
FOXA3P55318 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.16□□□□□ -2.22
FOXA3P55318 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC1.16□□□□□ -2.22
FOXA3P55318 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC1.16□□□□□ -2.22
FOXA3P55318 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC1.16□□□□□ -2.22
FOXA3P55318 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.16□□□□□ -2.22
FOXA3P55318 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC1.16□□□□□ -2.22
FOXA3P55318 AC091304.6-201ENST00000619761 202 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
FOXA3P55318 AL512506.2-201ENST00000624472 458 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC1.16□□□□□ -2.22
FOXA3P55318 AC110994.2-201ENST00000635481 492 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC1.16□□□□□ -2.22
FOXA3P55318 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.16□□□□□ -2.22
FOXA3P55318 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC1.15□□□□□ -2.23
FOXA3P55318 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
FOXA3P55318 MIR449A-201ENST00000362113 91 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 SNORD116-23-201ENST00000384645 92 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 AC074117.2-201ENST00000417130 397 ntBASIC1.15□□□□□ -2.23
FOXA3P55318 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC1.15□□□□□ -2.23
FOXA3P55318 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms