Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC1.4□□□□□ -2.18
CUX1P39880 DUXAP8-207ENST00000456786 622 ntBASIC1.4□□□□□ -2.18
CUX1P39880 RNA5SP310-201ENST00000459084 116 ntBASIC1.4□□□□□ -2.18
CUX1P39880 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC1.4□□□□□ -2.18
CUX1P39880 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.4□□□□□ -2.18
CUX1P39880 AC109809.1-201ENST00000619665 545 ntBASIC1.4□□□□□ -2.18
CUX1P39880 AC015726.3-201ENST00000624501 418 ntBASIC1.4□□□□□ -2.18
CUX1P39880 FAM157B-203ENST00000639350 358 ntBASIC1.4□□□□□ -2.18
CUX1P39880 IL33-203ENST00000456383 2501 ntTSL 5 BASIC1.4□□□□□ -2.19
CUX1P39880 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.4□□□□□ -2.19
CUX1P39880 ARL2BPP3-201ENST00000421226 480 ntBASIC1.4□□□□□ -2.19
CUX1P39880 AC009296.1-201ENST00000443146 155 ntBASIC1.4□□□□□ -2.19
CUX1P39880 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC1.4□□□□□ -2.19
CUX1P39880 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC1.4□□□□□ -2.19
CUX1P39880 AC087272.1-201ENST00000523624 533 ntBASIC1.4□□□□□ -2.19
CUX1P39880 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC1.4□□□□□ -2.19
CUX1P39880 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC1.4□□□□□ -2.19
CUX1P39880 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.4□□□□□ -2.19
CUX1P39880 AL355297.2-201ENST00000604792 129 ntBASIC1.4□□□□□ -2.19
CUX1P39880 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
CUX1P39880 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.39□□□□□ -2.19
CUX1P39880 MIR936-201ENST00000401264 98 ntBASIC1.39□□□□□ -2.19
CUX1P39880 RPS15AP40-201ENST00000419621 391 ntBASIC1.39□□□□□ -2.19
CUX1P39880 AL356867.1-201ENST00000429623 299 ntBASIC1.39□□□□□ -2.19
CUX1P39880 RPL23AP35-201ENST00000451906 501 ntBASIC1.39□□□□□ -2.19
CUX1P39880 RPL31P58-201ENST00000469001 379 ntBASIC1.39□□□□□ -2.19
CUX1P39880 RPL30P14-201ENST00000482744 348 ntBASIC1.39□□□□□ -2.19
CUX1P39880 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC1.39□□□□□ -2.19
CUX1P39880 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.39□□□□□ -2.19
CUX1P39880 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC1.39□□□□□ -2.19
CUX1P39880 AC087465.1-201ENST00000560574 245 ntBASIC1.39□□□□□ -2.19
CUX1P39880 GAS5-AS1-201ENST00000602767 694 ntBASIC1.39□□□□□ -2.19
CUX1P39880 AC055764.2-201ENST00000610089 670 ntBASIC1.39□□□□□ -2.19
CUX1P39880 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
CUX1P39880 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC1.39□□□□□ -2.19
CUX1P39880 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC1.38□□□□□ -2.19
CUX1P39880 DEFB108F-201ENST00000344638 222 ntBASIC1.38□□□□□ -2.19
CUX1P39880 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.38□□□□□ -2.19
CUX1P39880 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC1.38□□□□□ -2.19
CUX1P39880 DUXAP11-201ENST00000603858 526 ntBASIC1.38□□□□□ -2.19
CUX1P39880 AC006963.1-201ENST00000624003 1052 ntBASIC1.38□□□□□ -2.19
CUX1P39880 AC008669.1-201ENST00000565823 2178 ntBASIC1.38□□□□□ -2.19
CUX1P39880 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
CUX1P39880 RNU6-317P-201ENST00000384031 107 ntBASIC1.37□□□□□ -2.19
CUX1P39880 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.37□□□□□ -2.19
CUX1P39880 FTH1P12-201ENST00000432137 551 ntBASIC1.37□□□□□ -2.19
CUX1P39880 AC093155.1-201ENST00000440164 826 ntBASIC1.37□□□□□ -2.19
CUX1P39880 MTND2P8-201ENST00000450555 1025 ntBASIC1.37□□□□□ -2.19
CUX1P39880 SYPL1P1-201ENST00000473622 768 ntBASIC1.37□□□□□ -2.19
CUX1P39880 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
CUX1P39880 AP003072.2-201ENST00000527756 676 ntBASIC1.37□□□□□ -2.19
CUX1P39880 AC008269.2-201ENST00000561915 1105 ntBASIC1.37□□□□□ -2.19
CUX1P39880 PCNAP1-202ENST00000595299 752 ntBASIC1.37□□□□□ -2.19
CUX1P39880 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
CUX1P39880 SNORA16B-201ENST00000364674 135 ntBASIC1.36□□□□□ -2.19
CUX1P39880 RNU6-17P-201ENST00000384245 107 ntBASIC1.36□□□□□ -2.19
CUX1P39880 RNU6-18P-201ENST00000384527 107 ntBASIC1.36□□□□□ -2.19
CUX1P39880 RNU2-41P-201ENST00000410991 178 ntBASIC1.36□□□□□ -2.19
CUX1P39880 RNU1-98P-201ENST00000458992 160 ntBASIC1.36□□□□□ -2.19
CUX1P39880 SETP11-201ENST00000473027 690 ntBASIC1.36□□□□□ -2.19
CUX1P39880 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC1.36□□□□□ -2.19
CUX1P39880 SNORA31.18-201ENST00000517043 134 ntBASIC1.36□□□□□ -2.19
CUX1P39880 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC1.36□□□□□ -2.19
CUX1P39880 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.36□□□□□ -2.19
CUX1P39880 AL161449.1-201ENST00000414531 1199 ntBASIC1.35□□□□□ -2.19
CUX1P39880 RPL7P34-201ENST00000433316 712 ntBASIC1.35□□□□□ -2.19
CUX1P39880 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC1.35□□□□□ -2.19
CUX1P39880 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.35□□□□□ -2.19
CUX1P39880 AL022238.1-201ENST00000442557 355 ntBASIC1.35□□□□□ -2.19
CUX1P39880 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC1.35□□□□□ -2.19
CUX1P39880 snoU13.4-201ENST00000458916 104 ntBASIC1.35□□□□□ -2.19
CUX1P39880 LRRC34P2-201ENST00000514850 553 ntBASIC1.35□□□□□ -2.19
CUX1P39880 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.35□□□□□ -2.19
CUX1P39880 AC023824.2-201ENST00000566185 400 ntBASIC1.35□□□□□ -2.19
CUX1P39880 AC115085.1-201ENST00000588924 229 ntBASIC1.35□□□□□ -2.19
CUX1P39880 BNIP3P7-201ENST00000605641 516 ntBASIC1.35□□□□□ -2.19
CUX1P39880 AC095031.1-201ENST00000623685 672 ntBASIC1.35□□□□□ -2.19
CUX1P39880 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.35□□□□□ -2.19
CUX1P39880 CISD1P1-201ENST00000393907 327 ntBASIC1.35□□□□□ -2.19
CUX1P39880 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC1.35□□□□□ -2.19
CUX1P39880 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC1.35□□□□□ -2.19
CUX1P39880 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
CUX1P39880 OFD1P12Y-201ENST00000427963 1207 ntBASIC1.35□□□□□ -2.19
CUX1P39880 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC1.35□□□□□ -2.19
CUX1P39880 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC1.35□□□□□ -2.19
CUX1P39880 AC117503.1-201ENST00000472241 394 ntBASIC1.35□□□□□ -2.19
CUX1P39880 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
CUX1P39880 AC093752.1-206ENST00000511823 336 ntBASIC1.35□□□□□ -2.19
CUX1P39880 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC1.35□□□□□ -2.19
CUX1P39880 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.35□□□□□ -2.19
CUX1P39880 AC104229.1-201ENST00000561364 255 ntBASIC1.35□□□□□ -2.19
CUX1P39880 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
CUX1P39880 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC1.35□□□□□ -2.19
CUX1P39880 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC1.34□□□□□ -2.2
CUX1P39880 U8.14-201ENST00000390843 143 ntBASIC1.34□□□□□ -2.2
CUX1P39880 AC244636.1-201ENST00000421152 228 ntBASIC1.34□□□□□ -2.2
CUX1P39880 XKRYP1-201ENST00000423438 492 ntBASIC1.34□□□□□ -2.2
CUX1P39880 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC1.34□□□□□ -2.2
CUX1P39880 XKRYP2-201ENST00000432915 492 ntBASIC1.34□□□□□ -2.2
CUX1P39880 MTND2P26-201ENST00000528255 1029 ntBASIC1.34□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms