Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MTND2P20-201ENST00000440805 661 ntBASIC2.04□□□□□ -2.08
SHOX2O60902 OSTCP8-201ENST00000445117 448 ntBASIC2.04□□□□□ -2.08
SHOX2O60902 DDX10P1-201ENST00000448545 1933 ntBASIC2.04□□□□□ -2.08
SHOX2O60902 RPL26P9-201ENST00000457466 433 ntBASIC2.04□□□□□ -2.08
SHOX2O60902 SNORD121B-201ENST00000458838 81 ntBASIC2.04□□□□□ -2.08
SHOX2O60902 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.04□□□□□ -2.08
SHOX2O60902 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.04□□□□□ -2.08
SHOX2O60902 Y_RNA.670-201ENST00000516255 105 ntBASIC2.04□□□□□ -2.08
SHOX2O60902 RNA5SP281-201ENST00000516504 135 ntBASIC2.04□□□□□ -2.08
SHOX2O60902 RNU6-840P-201ENST00000517275 65 ntBASIC2.04□□□□□ -2.08
SHOX2O60902 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC2.04□□□□□ -2.08
SHOX2O60902 AC104417.1-201ENST00000523974 751 ntBASIC2.04□□□□□ -2.08
SHOX2O60902 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.04□□□□□ -2.08
SHOX2O60902 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC2.04□□□□□ -2.08
SHOX2O60902 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC2.04□□□□□ -2.08
SHOX2O60902 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.04□□□□□ -2.08
SHOX2O60902 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC2.04□□□□□ -2.08
SHOX2O60902 DNAJC19P3-201ENST00000594491 331 ntBASIC2.04□□□□□ -2.08
SHOX2O60902 AL603758.1-201ENST00000618654 241 ntBASIC2.04□□□□□ -2.08
SHOX2O60902 MIR6132-201ENST00000622083 109 ntBASIC2.04□□□□□ -2.08
SHOX2O60902 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC2.04□□□□□ -2.08
SHOX2O60902 CDR1-202ENST00000625883 1485 ntBASIC2.04□□□□□ -2.08
SHOX2O60902 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.04□□□□□ -2.08
SHOX2O60902 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.04□□□□□ -2.08
SHOX2O60902 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.03□□□□□ -2.08
SHOX2O60902 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
SHOX2O60902 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.03□□□□□ -2.08
SHOX2O60902 MTND4P27-201ENST00000450813 1354 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 SNORD114-1-201ENST00000362705 72 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 RNU5E-8P-201ENST00000363502 116 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 RNU6-1083P-201ENST00000384022 107 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 RNU6-140P-201ENST00000384566 108 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 AL079342.2-201ENST00000403367 482 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 RNU4-26P-201ENST00000410270 107 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 RNU6-920P-201ENST00000410926 92 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 ARF4P4-201ENST00000439608 520 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.03□□□□□ -2.08
SHOX2O60902 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.03□□□□□ -2.08
SHOX2O60902 MTND1P9-201ENST00000453775 944 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 OFD1P7Y-201ENST00000454643 1155 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.03□□□□□ -2.08
SHOX2O60902 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.03□□□□□ -2.08
SHOX2O60902 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC2.03□□□□□ -2.08
SHOX2O60902 AC105252.1-201ENST00000503089 286 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 SCARNA17.1-201ENST00000516211 143 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 SCARNA17.2-201ENST00000516334 143 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 NDUFS5P6-201ENST00000529136 295 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC2.03□□□□□ -2.08
SHOX2O60902 HIGD1AP17-201ENST00000554576 276 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC2.03□□□□□ -2.08
SHOX2O60902 AC009063.1-201ENST00000563342 702 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.03□□□□□ -2.08
SHOX2O60902 AC025811.1-201ENST00000604312 472 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.03□□□□□ -2.08
SHOX2O60902 FTX_3.1-201ENST00000610451 147 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 AC008759.3-201ENST00000613300 508 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.03□□□□□ -2.08
SHOX2O60902 SCARNA17.4-201ENST00000614296 143 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 AC009090.3-201ENST00000616553 565 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 CTSLP2-204ENST00000629029 392 ntBASIC2.03□□□□□ -2.08
SHOX2O60902 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
SHOX2O60902 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC2.02□□□□□ -2.09
SHOX2O60902 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
SHOX2O60902 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SHOX2O60902 Y_RNA.140-201ENST00000363474 103 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 RNU6-234P-201ENST00000365229 104 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 RNU6-359P-201ENST00000365466 108 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 MIR613-201ENST00000385248 95 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 RNU6-750P-201ENST00000390946 107 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 DHFRP6-201ENST00000401776 268 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 AL109755.1-201ENST00000401791 649 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 AC023141.4-201ENST00000412031 328 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SHOX2O60902 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.02□□□□□ -2.09
SHOX2O60902 MTCO2P1-201ENST00000424648 477 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 HMGB1P9-201ENST00000429856 646 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 USP12PX-201ENST00000432383 1057 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 TAF9P1-201ENST00000445421 515 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 AL136380.1-201ENST00000447970 162 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 ARPC3P5-201ENST00000448802 534 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 AC079776.3-201ENST00000450665 370 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 TAF9P2-201ENST00000454958 515 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 RPL23AP42-201ENST00000471152 471 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC2.02□□□□□ -2.09
SHOX2O60902 AC022447.3-201ENST00000506865 495 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 COL6A4P2-205ENST00000509855 506 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 AC093677.1-201ENST00000514414 678 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 AC118942.1-201ENST00000529674 1035 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.02□□□□□ -2.09
SHOX2O60902 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.02□□□□□ -2.09
SHOX2O60902 YWHAZP1-201ENST00000556286 722 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 AGGF1P5-201ENST00000567900 919 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 AC135628.1-201ENST00000568867 534 ntBASIC2.02□□□□□ -2.09
SHOX2O60902 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SHOX2O60902 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.02□□□□□ -2.09
SHOX2O60902 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.02□□□□□ -2.09
SHOX2O60902 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC2.02□□□□□ -2.09
SHOX2O60902 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms