Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 IGKV1-32-201ENST00000519290 311 ntBASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 HMGB1P14-201ENST00000557424 591 ntBASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 MIR7853-201ENST00000584820 132 ntBASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 MIR378J-201ENST00000611988 109 ntBASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 AC018628.1-201ENST00000624147 3819 ntBASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 CUL1P1-201ENST00000509510 2425 ntBASIC7□□□□□ -1.29
CCDC61Q9Y6R9 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 AC009541.1-201ENST00000438279 2662 ntBASIC7□□□□□ -1.29
CCDC61Q9Y6R9 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 RNU1-32P-201ENST00000363937 159 ntBASIC7□□□□□ -1.29
CCDC61Q9Y6R9 RNU5E-7P-201ENST00000365290 117 ntBASIC7□□□□□ -1.29
CCDC61Q9Y6R9 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 RNA5SP113-201ENST00000410486 84 ntBASIC7□□□□□ -1.29
CCDC61Q9Y6R9 AIMP1P2-201ENST00000425294 312 ntBASIC7□□□□□ -1.29
CCDC61Q9Y6R9 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 RN7SL443P-201ENST00000464331 290 ntBASIC7□□□□□ -1.29
CCDC61Q9Y6R9 RN7SL459P-201ENST00000481078 302 ntBASIC7□□□□□ -1.29
CCDC61Q9Y6R9 AC012158.1-204ENST00000483430 465 ntBASIC7□□□□□ -1.29
CCDC61Q9Y6R9 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 AP006289.1-201ENST00000538089 277 ntBASIC7□□□□□ -1.29
CCDC61Q9Y6R9 MIR3646-201ENST00000578301 84 ntBASIC7□□□□□ -1.29
CCDC61Q9Y6R9 AC091042.1-201ENST00000579213 173 ntBASIC7□□□□□ -1.29
CCDC61Q9Y6R9 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 AC107294.1-201ENST00000609524 467 ntBASIC7□□□□□ -1.29
CCDC61Q9Y6R9 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 AC016745.2-201ENST00000608834 3443 ntBASIC7□□□□□ -1.29
CCDC61Q9Y6R9 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC7□□□□□ -1.29
CCDC61Q9Y6R9 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 AL360270.2-201ENST00000562952 5985 ntBASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 SNORA25.7-201ENST00000364375 127 ntBASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 SNORD14B-201ENST00000364533 90 ntBASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 Y_RNA.388-201ENST00000383919 113 ntBASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 GAS5-208ENST00000425771 242 ntTSL 3 BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 AC016712.1-201ENST00000431088 378 ntBASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 AC073264.2-201ENST00000448886 166 ntBASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 AL031737.1-201ENST00000450125 223 ntBASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 GMPSP1-201ENST00000514075 579 ntBASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 MIR3667-201ENST00000581025 74 ntBASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 AC099654.2-201ENST00000433031 1980 ntBASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC6.99□□□□□ -1.29
CCDC61Q9Y6R9 MTND5P35-201ENST00000557537 1720 ntBASIC6.98□□□□□ -1.29
CCDC61Q9Y6R9 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC61Q9Y6R9 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC61Q9Y6R9 AF127577.6-201ENST00000623352 2191 ntBASIC6.98□□□□□ -1.29
CCDC61Q9Y6R9 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC61Q9Y6R9 AC004158.1-201ENST00000564508 4319 ntBASIC6.98□□□□□ -1.29
CCDC61Q9Y6R9 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC61Q9Y6R9 RNU6-281P-201ENST00000384212 103 ntBASIC6.98□□□□□ -1.29
CCDC61Q9Y6R9 RNU6-1145P-201ENST00000384246 107 ntBASIC6.98□□□□□ -1.29
CCDC61Q9Y6R9 MT-TC-201ENST00000387405 66 ntBASIC6.98□□□□□ -1.29
CCDC61Q9Y6R9 RNU2-50P-201ENST00000410494 143 ntBASIC6.98□□□□□ -1.29
CCDC61Q9Y6R9 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC6.98□□□□□ -1.29
CCDC61Q9Y6R9 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC6.98□□□□□ -1.29
CCDC61Q9Y6R9 AL354710.1-201ENST00000453641 246 ntBASIC6.98□□□□□ -1.29
CCDC61Q9Y6R9 HIGD1AP3-201ENST00000515857 278 ntBASIC6.98□□□□□ -1.29
CCDC61Q9Y6R9 AC109810.1-201ENST00000534066 224 ntBASIC6.98□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms