Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.9□□□□□ -1.78
PCDHA3Q9Y5H8 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
PCDHA3Q9Y5H8 Y_RNA.263-201ENST00000364659 114 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 RNU6-1127P-201ENST00000384580 107 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 RNU6-510P-201ENST00000391239 108 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 MIR1193-201ENST00000408109 78 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 RN7SKP263-201ENST00000411194 309 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 EEF1A1P40-201ENST00000412883 573 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 AL645937.1-202ENST00000421799 937 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 MTCO3P9-201ENST00000506989 781 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 CCDC34P1-201ENST00000507441 517 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 APOOP4-201ENST00000513530 597 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 RN7SKP21-201ENST00000516503 220 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 SCARNA14-201ENST00000516903 136 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 RNU6-1314P-201ENST00000517139 104 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 ATP5F1P5-201ENST00000526403 760 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 AC004024.1-201ENST00000549244 247 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 AC009570.1-201ENST00000609599 745 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 Y_RNA.804-201ENST00000615262 101 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 U7.8-201ENST00000619968 63 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.9□□□□□ -1.79
PCDHA3Q9Y5H8 MTND4P35-201ENST00000604257 1375 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 CISD1P1-201ENST00000393907 327 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 RPL32P23-201ENST00000397237 405 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 SNORA3.3-201ENST00000408712 125 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 Z85995.1-201ENST00000415547 335 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 RPL35AP12-201ENST00000425362 338 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 AC091390.3-201ENST00000426478 338 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 RPL7P12-201ENST00000446719 750 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 ANP32BP2-201ENST00000454525 545 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 SCARNA18-201ENST00000459004 134 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 RNU6-1208P-201ENST00000459588 107 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 VN1R17P-201ENST00000472048 1090 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 AP001086.1-201ENST00000494882 321 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 Y_RNA.654-201ENST00000497848 106 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 Y_RNA.665-201ENST00000516177 98 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 RNA5SP309-201ENST00000516670 106 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 AL118558.2-201ENST00000556294 238 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 MIR3160-1-201ENST00000577972 85 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 AC013553.2-201ENST00000604244 589 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 AC008568.2-201ENST00000623862 2313 ntBASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.89□□□□□ -1.79
PCDHA3Q9Y5H8 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.88□□□□□ -1.79
PCDHA3Q9Y5H8 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PCDHA3Q9Y5H8 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
PCDHA3Q9Y5H8 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
PCDHA3Q9Y5H8 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.88□□□□□ -1.79
PCDHA3Q9Y5H8 UBE2L2-201ENST00000254302 429 ntBASIC3.88□□□□□ -1.79
PCDHA3Q9Y5H8 RNA5SP479-201ENST00000364858 117 ntBASIC3.88□□□□□ -1.79
PCDHA3Q9Y5H8 Y_RNA.534-201ENST00000384599 112 ntBASIC3.88□□□□□ -1.79
PCDHA3Q9Y5H8 AL590704.1-201ENST00000402856 794 ntBASIC3.88□□□□□ -1.79
PCDHA3Q9Y5H8 RN7SKP32-201ENST00000410167 303 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 153.1 ms