Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 RNU6-1167P-201ENST00000363227 94 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 RNU6-270P-201ENST00000364131 105 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 RNU6-169P-201ENST00000365336 107 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 RNU6-1035P-201ENST00000384477 107 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 RNU6-14P-201ENST00000384630 106 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 MIR558-201ENST00000384920 94 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 SNORD67-201ENST00000390833 111 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 RNA5SP252-201ENST00000391131 119 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 RN7SKP58-201ENST00000411010 305 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 SDCBPP3-201ENST00000419629 891 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 TPT1P7-201ENST00000458300 517 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 RN7SL863P-201ENST00000462370 296 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 AL672167.3-201ENST00000465951 960 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 AC004924.1-201ENST00000480160 781 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 LAMTOR3P2-201ENST00000504479 232 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 RNA5SP471-201ENST00000516971 106 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 RNA5SP290-201ENST00000517133 127 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 UBL5P2-201ENST00000583788 219 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 AC098826.3-201ENST00000603823 466 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 AL161729.4-201ENST00000604650 476 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 AL136363.1-201ENST00000605349 337 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 AC012557.2-201ENST00000605919 418 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 MIR98-201ENST00000606724 119 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 AL589743.7-201ENST00000612637 233 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 AC007998.5-201ENST00000622938 237 ntBASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
LIMA1Q9UHB6 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 GABRG2-229ENST00000641017 3628 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 AC073343.1-201ENST00000328239 651 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 RNU4-75P-201ENST00000364621 146 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 RNU6-817P-201ENST00000391083 104 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 SNORA48.8-201ENST00000391324 134 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 ZNF863P-201ENST00000426746 417 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 AC104651.1-201ENST00000427559 735 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 DLGAP5P1-201ENST00000430307 464 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 RPS29P6-201ENST00000438196 145 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 AC010099.1-201ENST00000455434 375 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 RPL37P6-201ENST00000460682 294 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 AC091153.1-201ENST00000466297 402 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 MTND3P5-201ENST00000512798 333 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 RN7SKP298-201ENST00000515950 94 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 MTCO2P4-201ENST00000517968 247 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 AC006504.3-201ENST00000586818 523 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 AC136601.2-201ENST00000604356 474 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 AL161798.1-201ENST00000604630 131 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 AC005332.10-201ENST00000612725 619 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 AC091834.1-201ENST00000614543 472 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 AC099842.1-201ENST00000619919 596 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 AC099506.2-201ENST00000623074 221 ntBASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.32□□□□□ -1.88
LIMA1Q9UHB6 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 MAPK10-322ENST00000641485 4530 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 UBE2L2-201ENST00000254302 429 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 Y_RNA.245-201ENST00000364493 95 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 RNU6-946P-201ENST00000383878 107 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 RNU6-217P-201ENST00000384164 104 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 RNU4-47P-201ENST00000410876 114 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AL663109.1-201ENST00000411498 844 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 ZNF885P-201ENST00000420174 1098 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 PIGFP2-201ENST00000421400 651 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 MED13P1-201ENST00000428342 171 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AC005300.1-201ENST00000428401 373 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 MTCO3P5-201ENST00000433620 714 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms