Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AC009268.2-201ENST00000621925 457 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AC112204.3-201ENST00000623822 332 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 RNU6-432P-201ENST00000384196 109 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 SNORA51.11-201ENST00000384442 131 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 RNU6-83P-201ENST00000384568 112 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 MTCO1P17-201ENST00000411522 491 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 TPMTP3-201ENST00000411928 735 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 MORF4L1P6-201ENST00000418771 268 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 AC083875.1-201ENST00000419509 405 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 AC013410.2-201ENST00000422627 201 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 NUP35P1-201ENST00000422734 947 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 RPS15AP28-201ENST00000435088 386 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 DDX10P1-201ENST00000448545 1933 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 MTND4P1-201ENST00000457501 1466 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 RPL36AP51-201ENST00000487216 318 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 RPS29P20-201ENST00000489592 171 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 AF038458.1-201ENST00000588406 262 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 PCF11-AS1-201ENST00000602322 1516 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 AC007621.1-201ENST00000604544 437 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 AC097468.3-201ENST00000607956 456 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 AC092953.2-201ENST00000608000 699 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 AC010133.1-201ENST00000615809 842 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 OR4G3P-201ENST00000633500 913 ntBASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
EXOSC4Q9NPD3 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AC080128.1-201ENST00000474389 1917 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 RNU6-220P-201ENST00000390919 107 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AL359511.1-201ENST00000402970 211 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 TXNP7-201ENST00000406296 293 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 CCNG1P1-201ENST00000406783 885 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 USP12PX-201ENST00000432383 1057 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AC084290.1-201ENST00000434995 374 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 RSU1P2-202ENST00000437884 485 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 MTATP6P30-201ENST00000443540 664 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 UBTFL10-201ENST00000528532 562 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 MTND4LP5-201ENST00000605152 292 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AL450336.1-201ENST00000605180 586 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AL592221.1-201ENST00000605266 382 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AC135507.1-201ENST00000607214 561 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AC007349.4-201ENST00000608114 532 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AC245884.12-201ENST00000615364 59 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 MIR6817-201ENST00000615588 66 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AP003485.2-201ENST00000623636 610 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 MIR1291-201ENST00000627649 87 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 CU459211.1-201ENST00000635667 749 ntBASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
EXOSC4Q9NPD3 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 ZNF876P-202ENST00000398732 1485 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 Z82209.1-201ENST00000422141 2135 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 FTLP6-201ENST00000355274 422 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 RNU6-462P-201ENST00000362659 105 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 RNU6-433P-201ENST00000363216 104 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 RNU6-741P-201ENST00000383889 107 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 RNU6-157P-201ENST00000383957 107 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 RNU6-723P-201ENST00000383973 107 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 MIR518C-201ENST00000384822 101 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 MIR513B-201ENST00000385136 84 ntBASIC2.02□□□□□ -2.09
EXOSC4Q9NPD3 U3.26-201ENST00000391236 204 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms