Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 MIR1302-10-201ENST00000408734 138 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 AL513331.1-201ENST00000411908 397 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 RPLP0P7-201ENST00000416050 667 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 HMGB1P27-201ENST00000431429 603 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 RPL21P11-201ENST00000461458 483 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 FTH1P2-201ENST00000466086 412 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 AC012181.1-201ENST00000479895 423 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 TRBVA-201ENST00000498804 316 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 AC009901.1-201ENST00000506703 541 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 RNU6-927P-201ENST00000516199 100 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 SCARNA15.1-201ENST00000516384 125 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 SNORA25.17-201ENST00000517184 124 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 MED28P6-201ENST00000558776 231 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 FRG2DP-202ENST00000566967 323 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 AC005255.1-201ENST00000593748 216 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 VN1R85P-201ENST00000601587 426 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 AC245389.1-201ENST00000605141 529 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 MIR1302-2-201ENST00000607096 138 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 AC064836.2-201ENST00000609491 462 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 FAM157A-202ENST00000615155 405 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 IPO8P1-201ENST00000455509 3109 ntBASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.23□□□□□ -1.73
PCIF1Q9H4Z3 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 Y_RNA.138-201ENST00000363462 102 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 RNU6-1227P-201ENST00000383981 107 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 RNU6-434P-201ENST00000384376 107 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 MIR30B-201ENST00000384850 88 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 AL590704.1-201ENST00000402856 794 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 VN1R36P-201ENST00000414936 291 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 EI24P1-201ENST00000416584 867 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 MTCO2P12-201ENST00000427426 682 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 RPS3AP52-201ENST00000435639 297 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 USP9YP7-201ENST00000436723 430 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 NDUFS5P3-201ENST00000450668 321 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 USP9YP32-201ENST00000452432 430 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 RPL23AP31-201ENST00000456160 467 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 RN7SL323P-201ENST00000494712 295 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 AC025445.1-201ENST00000502728 300 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 AC026402.1-201ENST00000513642 170 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 RNU6-559P-201ENST00000516151 98 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 IGKV2D-23-201ENST00000518179 286 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 COPS8P3-201ENST00000526024 482 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 AP001330.4-201ENST00000604350 154 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 APOOP1-201ENST00000604695 592 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 AC034102.8-201ENST00000615146 484 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 AL359757.2-201ENST00000624309 274 ntBASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
PCIF1Q9H4Z3 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.21□□□□□ -1.73
PCIF1Q9H4Z3 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.21□□□□□ -1.73
PCIF1Q9H4Z3 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
PCIF1Q9H4Z3 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
PCIF1Q9H4Z3 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 Y_RNA.259-201ENST00000364619 101 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 SNORD116-29-201ENST00000384516 83 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 Y_RNA.534-201ENST00000384599 112 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 BX842559.1-201ENST00000419615 532 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 AC091390.3-201ENST00000426478 338 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 RPL7P2-201ENST00000427639 268 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 AC236972.2-201ENST00000434979 310 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 HMGB3P22-202ENST00000451823 572 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 Y_RNA.635-201ENST00000459041 101 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 AC117503.1-201ENST00000472241 394 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 RPS26P15-201ENST00000488067 348 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 RN7SKP13-201ENST00000515933 244 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 SNORA14.1-201ENST00000516113 141 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 RNU6-914P-201ENST00000516749 109 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 RNU6-566P-201ENST00000516790 107 ntBASIC4.21□□□□□ -1.74
PCIF1Q9H4Z3 RNA5SP471-201ENST00000516971 106 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms