Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AL136360.1-201ENST00000503377 1900 ntBASIC2.93□□□□□ -1.94
CCDC43Q96MW1 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC43Q96MW1 MTND5P29-201ENST00000458676 1807 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 Y_RNA.510-201ENST00000384511 114 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 RNU6-750P-201ENST00000390946 107 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC43Q96MW1 HMGB1P49-201ENST00000418882 569 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 SKA2P1-201ENST00000425592 390 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC43Q96MW1 MTND1P20-201ENST00000430341 950 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC43Q96MW1 FCF1P1-201ENST00000432690 571 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 Z80107.1-201ENST00000436830 412 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 LARP1BP3-201ENST00000437229 869 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC43Q96MW1 AL109933.2-201ENST00000452651 260 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 AP000705.1-201ENST00000454567 350 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC2.92□□□□□ -1.94
CCDC43Q96MW1 AC107626.1-201ENST00000471084 183 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 RPS27AP10-201ENST00000496103 208 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC43Q96MW1 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC43Q96MW1 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 RNA5SP471-201ENST00000516971 106 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC43Q96MW1 AC004486.1-201ENST00000546846 233 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC43Q96MW1 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC43Q96MW1 MIR3117-201ENST00000584034 78 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 MIR4293-201ENST00000584305 78 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 BNIP3P40-201ENST00000596017 556 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 AC098826.3-201ENST00000603823 466 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 AC011458.1-201ENST00000604034 617 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 RPL23AP88-201ENST00000605759 454 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 AC092953.2-201ENST00000608000 699 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 AL355472.4-201ENST00000610233 626 ntBASIC2.92□□□□□ -1.94
CCDC43Q96MW1 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC43Q96MW1 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
CCDC43Q96MW1 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.92□□□□□ -1.94
CCDC43Q96MW1 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC43Q96MW1 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC43Q96MW1 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
CCDC43Q96MW1 MIR592-201ENST00000384959 97 ntBASIC2.91□□□□□ -1.94
CCDC43Q96MW1 RPS4XP8-201ENST00000402039 771 ntBASIC2.91□□□□□ -1.94
CCDC43Q96MW1 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC43Q96MW1 RPL17P12-201ENST00000413391 526 ntBASIC2.91□□□□□ -1.94
CCDC43Q96MW1 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC43Q96MW1 RPLP0P7-201ENST00000416050 667 ntBASIC2.91□□□□□ -1.94
CCDC43Q96MW1 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.91□□□□□ -1.94
CCDC43Q96MW1 AL022400.1-201ENST00000423946 935 ntBASIC2.91□□□□□ -1.94
CCDC43Q96MW1 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC43Q96MW1 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.91□□□□□ -1.94
CCDC43Q96MW1 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC43Q96MW1 SRIP1-201ENST00000489235 288 ntBASIC2.91□□□□□ -1.94
CCDC43Q96MW1 EIF4EP3-201ENST00000498782 656 ntBASIC2.91□□□□□ -1.94
CCDC43Q96MW1 TBCAP3-201ENST00000512475 312 ntBASIC2.91□□□□□ -1.94
CCDC43Q96MW1 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC43Q96MW1 RPPH1-2P-201ENST00000516688 293 ntBASIC2.91□□□□□ -1.94
CCDC43Q96MW1 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.91□□□□□ -1.94
CCDC43Q96MW1 DEFB108A-201ENST00000530110 222 ntBASIC2.91□□□□□ -1.94
CCDC43Q96MW1 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC43Q96MW1 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.91□□□□□ -1.94
CCDC43Q96MW1 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC43Q96MW1 NRBF2P5-201ENST00000603087 788 ntBASIC2.91□□□□□ -1.94
CCDC43Q96MW1 AP000403.1-201ENST00000603349 851 ntBASIC2.91□□□□□ -1.94
CCDC43Q96MW1 AL161798.1-201ENST00000604630 131 ntBASIC2.91□□□□□ -1.94
CCDC43Q96MW1 AC245517.5-201ENST00000611529 162 ntBASIC2.91□□□□□ -1.94
CCDC43Q96MW1 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
CCDC43Q96MW1 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
CCDC43Q96MW1 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC43Q96MW1 RNU6-778P-201ENST00000363269 103 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 RNU6-512P-201ENST00000364438 103 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.9□□□□□ -1.95
CCDC43Q96MW1 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC43Q96MW1 RNA5SP210-201ENST00000391034 120 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 AC078974.1-201ENST00000411597 223 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.9□□□□□ -1.95
CCDC43Q96MW1 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC43Q96MW1 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC2.9□□□□□ -1.95
CCDC43Q96MW1 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.9□□□□□ -1.95
CCDC43Q96MW1 MED14P1-201ENST00000430517 648 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 UBE2FP3-201ENST00000436366 524 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 AL445687.1-201ENST00000439946 251 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 ZNF736P12Y-201ENST00000443152 1243 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 ST13P20-201ENST00000447996 1065 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.9□□□□□ -1.95
CCDC43Q96MW1 ANKRD26P4-201ENST00000455755 950 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC43Q96MW1 AC119751.5-201ENST00000514077 770 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.9□□□□□ -1.95
CCDC43Q96MW1 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC2.9□□□□□ -1.95
CCDC43Q96MW1 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC43Q96MW1 MIR3670-2-201ENST00000582974 65 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 MIR3670-1-201ENST00000584160 65 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 MIR3670-3-201ENST00000584855 65 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 AC105148.1-201ENST00000604961 409 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 AC013244.3-201ENST00000605614 388 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 AC107952.2-201ENST00000606048 486 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 MIR3670-4-201ENST00000612260 65 ntBASIC2.9□□□□□ -1.95
CCDC43Q96MW1 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms