Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 U3.26-201ENST00000391236 204 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC2.69□□□□□ -1.98
VPS39Q96JC1 AC007064.1-201ENST00000412238 351 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS39Q96JC1 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC2.69□□□□□ -1.98
VPS39Q96JC1 DNAJA1P2-201ENST00000421360 1197 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 BPY2DP-201ENST00000422208 265 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC2.69□□□□□ -1.98
VPS39Q96JC1 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS39Q96JC1 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS39Q96JC1 RPL36AP6-201ENST00000435770 321 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 SNRPEP9-201ENST00000436794 238 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS39Q96JC1 MTND5P2-201ENST00000442927 1142 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 MTCO3P45-201ENST00000443036 613 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 FAM103A2P-201ENST00000444122 354 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS39Q96JC1 AC013267.1-201ENST00000458227 267 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 AL139824.2-201ENST00000458731 1095 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 AC011825.1-201ENST00000484967 388 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
VPS39Q96JC1 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.69□□□□□ -1.98
VPS39Q96JC1 AC098591.2-201ENST00000510152 315 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS39Q96JC1 MTND5P4-201ENST00000514978 288 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS39Q96JC1 RNU6-1129P-201ENST00000515964 104 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 SNORA3.4-201ENST00000515969 96 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS39Q96JC1 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS39Q96JC1 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC2.69□□□□□ -1.98
VPS39Q96JC1 AC007954.1-201ENST00000554198 494 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS39Q96JC1 CYCSP39-201ENST00000565821 309 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 MIR4446-201ENST00000578505 67 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 AC060771.1-201ENST00000582031 164 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.69□□□□□ -1.98
VPS39Q96JC1 AC008751.2-201ENST00000597885 980 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 AP000811.1-201ENST00000603803 651 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 AC072039.2-201ENST00000608883 439 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 HMGB1P24-202ENST00000615653 685 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 DLEU1_1.1-201ENST00000618107 190 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 AC112204.3-201ENST00000623822 332 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
VPS39Q96JC1 MTND4P27-201ENST00000450813 1354 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 AC006378.2-201ENST00000623178 2476 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 ZNF833P-201ENST00000424938 1494 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.69□□□□□ -1.98
VPS39Q96JC1 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.68□□□□□ -1.98
VPS39Q96JC1 AC080128.1-201ENST00000474389 1917 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
VPS39Q96JC1 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
VPS39Q96JC1 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
VPS39Q96JC1 RNU6-1083P-201ENST00000384022 107 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 RNU6-769P-201ENST00000384407 104 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 MIR128-1-201ENST00000384921 82 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 MIR483-201ENST00000385070 76 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 AL138827.1-201ENST00000402666 306 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 NDUFS5P4-201ENST00000412983 318 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 AL592148.1-201ENST00000413568 445 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.68□□□□□ -1.98
VPS39Q96JC1 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS39Q96JC1 HMGB1P9-201ENST00000429856 646 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 LARP1BP3-201ENST00000437229 869 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 RBM43P1-201ENST00000476891 1081 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 AC072039.1-201ENST00000477611 581 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 HIGD1AP13-201ENST00000509878 289 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS39Q96JC1 NAP1L1P1-201ENST00000524793 1063 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 AP004247.1-201ENST00000531556 1289 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 NACAP3-201ENST00000552100 481 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 AC012435.1-202ENST00000568772 240 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 MIR4635-201ENST00000583759 79 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC2.68□□□□□ -1.98
VPS39Q96JC1 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
VPS39Q96JC1 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS39Q96JC1 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 AC012150.2-201ENST00000621300 544 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 AP000770.2-201ENST00000623694 100 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
VPS39Q96JC1 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.68□□□□□ -1.98
VPS39Q96JC1 AC004520.1-201ENST00000608362 1413 ntBASIC2.68□□□□□ -1.98
VPS39Q96JC1 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.67□□□□□ -1.98
VPS39Q96JC1 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.67□□□□□ -1.98
VPS39Q96JC1 MTND5P33-201ENST00000571250 1450 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
VPS39Q96JC1 GNG5P1-201ENST00000255500 204 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 SNORA38-201ENST00000363946 132 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 Y_RNA.245-201ENST00000364493 95 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 SNORA48.2-201ENST00000390926 124 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 RN7SKP266-201ENST00000410232 287 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 RNA5SP21-201ENST00000410917 96 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 RNU6-1328P-201ENST00000410938 106 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 HMGB1P11-201ENST00000413899 637 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 USP12PX-201ENST00000432383 1057 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 AC087499.2-201ENST00000432861 149 ntBASIC2.67□□□□□ -1.98
VPS39Q96JC1 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS39Q96JC1 AC098831.1-201ENST00000440661 216 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 140 ms