Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 CCDC58P2-201ENST00000417131 366 ntBASIC3.23□□□□□ -1.89
NPHP3Q7Z494 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.23□□□□□ -1.89
NPHP3Q7Z494 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.23□□□□□ -1.89
NPHP3Q7Z494 UBE2FP3-201ENST00000436366 524 ntBASIC3.23□□□□□ -1.89
NPHP3Q7Z494 MTCYBP39-201ENST00000437562 491 ntBASIC3.23□□□□□ -1.89
NPHP3Q7Z494 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.23□□□□□ -1.89
NPHP3Q7Z494 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.23□□□□□ -1.89
NPHP3Q7Z494 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.23□□□□□ -1.89
NPHP3Q7Z494 AC093809.1-201ENST00000509155 340 ntBASIC3.23□□□□□ -1.89
NPHP3Q7Z494 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.23□□□□□ -1.89
NPHP3Q7Z494 RNA5SP216-201ENST00000516111 123 ntBASIC3.23□□□□□ -1.89
NPHP3Q7Z494 IGHV3-76-201ENST00000522465 295 ntBASIC3.23□□□□□ -1.89
NPHP3Q7Z494 AC013828.2-201ENST00000532487 235 ntBASIC3.23□□□□□ -1.89
NPHP3Q7Z494 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
NPHP3Q7Z494 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.23□□□□□ -1.89
NPHP3Q7Z494 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.23□□□□□ -1.89
NPHP3Q7Z494 MIR544B-201ENST00000582372 78 ntBASIC3.23□□□□□ -1.89
NPHP3Q7Z494 BNIP3P23-201ENST00000599655 511 ntBASIC3.23□□□□□ -1.89
NPHP3Q7Z494 AC016727.1-205ENST00000605437 569 ntBASIC3.23□□□□□ -1.89
NPHP3Q7Z494 AC122133.1-201ENST00000613964 233 ntBASIC3.23□□□□□ -1.89
NPHP3Q7Z494 AL590099.1-201ENST00000615276 138 ntBASIC3.23□□□□□ -1.89
NPHP3Q7Z494 AL603755.1-201ENST00000619504 163 ntBASIC3.23□□□□□ -1.89
NPHP3Q7Z494 AC078883.4-201ENST00000623218 367 ntBASIC3.23□□□□□ -1.89
NPHP3Q7Z494 AL356266.1-201ENST00000623311 483 ntBASIC3.23□□□□□ -1.89
NPHP3Q7Z494 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
NPHP3Q7Z494 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
NPHP3Q7Z494 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
NPHP3Q7Z494 RNU6-500P-201ENST00000362349 107 ntBASIC3.22□□□□□ -1.89
NPHP3Q7Z494 RNU6-1207P-201ENST00000384343 107 ntBASIC3.22□□□□□ -1.89
NPHP3Q7Z494 CASP3-203ENST00000393588 677 ntTSL 4 BASIC3.22□□□□□ -1.89
NPHP3Q7Z494 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC3.22□□□□□ -1.89
NPHP3Q7Z494 HSPE1P1-201ENST00000421494 318 ntBASIC3.22□□□□□ -1.89
NPHP3Q7Z494 RPL27AP8-201ENST00000424277 446 ntBASIC3.22□□□□□ -1.89
NPHP3Q7Z494 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.22□□□□□ -1.89
NPHP3Q7Z494 LARP1BP3-201ENST00000437229 869 ntBASIC3.22□□□□□ -1.89
NPHP3Q7Z494 AL590664.1-201ENST00000448065 339 ntBASIC3.22□□□□□ -1.89
NPHP3Q7Z494 AP000542.1-201ENST00000448473 371 ntBASIC3.22□□□□□ -1.89
NPHP3Q7Z494 snoU13.8-201ENST00000458890 104 ntBASIC3.22□□□□□ -1.89
NPHP3Q7Z494 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.22□□□□□ -1.89
NPHP3Q7Z494 AC005178.1-201ENST00000508392 440 ntBASIC3.22□□□□□ -1.89
NPHP3Q7Z494 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.22□□□□□ -1.89
NPHP3Q7Z494 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.22□□□□□ -1.89
NPHP3Q7Z494 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.22□□□□□ -1.89
NPHP3Q7Z494 OR11H5P-201ENST00000554039 926 ntBASIC3.22□□□□□ -1.89
NPHP3Q7Z494 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.22□□□□□ -1.89
NPHP3Q7Z494 AC034268.2-201ENST00000571784 482 ntBASIC3.22□□□□□ -1.89
NPHP3Q7Z494 MIR5007-201ENST00000583098 95 ntBASIC3.22□□□□□ -1.89
NPHP3Q7Z494 AL353997.4-201ENST00000586196 166 ntBASIC3.22□□□□□ -1.89
NPHP3Q7Z494 AF246928.1-201ENST00000623768 87 ntBASIC3.22□□□□□ -1.89
NPHP3Q7Z494 AC007494.3-201ENST00000624660 743 ntBASIC3.22□□□□□ -1.89
NPHP3Q7Z494 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
NPHP3Q7Z494 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
NPHP3Q7Z494 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.22□□□□□ -1.89
NPHP3Q7Z494 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.22□□□□□ -1.89
NPHP3Q7Z494 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.21□□□□□ -1.89
NPHP3Q7Z494 DEFB108F-201ENST00000344638 222 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 AL161781.1-201ENST00000354277 403 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC3.21□□□□□ -1.89
NPHP3Q7Z494 RNU6-1159P-201ENST00000362933 107 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 RNY3P9-201ENST00000384727 106 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.21□□□□□ -1.89
NPHP3Q7Z494 AL356421.1-201ENST00000403255 413 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 GSTA9P-201ENST00000406231 611 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 RNU6-920P-201ENST00000410926 92 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 HMGB1P11-201ENST00000413899 637 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.21□□□□□ -1.89
NPHP3Q7Z494 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC3.21□□□□□ -1.89
NPHP3Q7Z494 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.21□□□□□ -1.89
NPHP3Q7Z494 Z98742.2-201ENST00000431564 187 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 NDUFB4P6-201ENST00000436819 366 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 RSU1P2-202ENST00000437884 485 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.21□□□□□ -1.89
NPHP3Q7Z494 RPL39P40-201ENST00000445481 146 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 RPL31P60-201ENST00000478450 367 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 RPF2P2-201ENST00000504693 896 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.21□□□□□ -1.89
NPHP3Q7Z494 AC109464.2-201ENST00000510242 943 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 AL359273.1-201ENST00000510918 627 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 AC022483.1-201ENST00000514020 567 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 DEFB108D-201ENST00000527787 222 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 ELOCP31-201ENST00000540463 467 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 AC123904.3-201ENST00000547218 814 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.21□□□□□ -1.89
NPHP3Q7Z494 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.21□□□□□ -1.89
NPHP3Q7Z494 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.21□□□□□ -1.89
NPHP3Q7Z494 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.21□□□□□ -1.89
NPHP3Q7Z494 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.21□□□□□ -1.89
NPHP3Q7Z494 WISP1-OT1-201ENST00000602893 642 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 MTCYBP22-201ENST00000603788 447 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.21□□□□□ -1.89
NPHP3Q7Z494 CU459211.1-201ENST00000635667 749 ntBASIC3.21□□□□□ -1.89
NPHP3Q7Z494 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
NPHP3Q7Z494 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
NPHP3Q7Z494 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
NPHP3Q7Z494 Y_RNA.4-201ENST00000362333 112 ntBASIC3.2□□□□□ -1.9
NPHP3Q7Z494 SNORD116-8-201ENST00000384365 95 ntBASIC3.2□□□□□ -1.9
NPHP3Q7Z494 SNORA1.3-201ENST00000384676 136 ntBASIC3.2□□□□□ -1.9
NPHP3Q7Z494 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.2□□□□□ -1.9
NPHP3Q7Z494 RN7SKP266-201ENST00000410232 287 ntBASIC3.2□□□□□ -1.9
NPHP3Q7Z494 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 122.1 ms