Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
RNF4P78317 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
RNF4P78317 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
RNF4P78317 RNU6-384P-201ENST00000364900 104 ntBASIC4.38□□□□□ -1.71
RNF4P78317 Y_RNA.533-201ENST00000384596 114 ntBASIC4.38□□□□□ -1.71
RNF4P78317 RNU6-713P-201ENST00000384761 107 ntBASIC4.38□□□□□ -1.71
RNF4P78317 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
RNF4P78317 AL590762.2-201ENST00000395798 571 ntBASIC4.38□□□□□ -1.71
RNF4P78317 MIR1252-201ENST00000408861 65 ntBASIC4.38□□□□□ -1.71
RNF4P78317 RNU6-847P-201ENST00000411115 108 ntBASIC4.38□□□□□ -1.71
RNF4P78317 AL592148.1-201ENST00000413568 445 ntBASIC4.38□□□□□ -1.71
RNF4P78317 AL590139.1-201ENST00000416267 400 ntBASIC4.38□□□□□ -1.71
RNF4P78317 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.38□□□□□ -1.71
RNF4P78317 PGBD4P6-201ENST00000421501 610 ntBASIC4.38□□□□□ -1.71
RNF4P78317 AC092573.2-201ENST00000434546 243 ntBASIC4.38□□□□□ -1.71
RNF4P78317 AC004938.1-201ENST00000438468 308 ntBASIC4.38□□□□□ -1.71
RNF4P78317 OSTCP8-201ENST00000445117 448 ntBASIC4.38□□□□□ -1.71
RNF4P78317 AC079168.2-201ENST00000453977 416 ntBASIC4.38□□□□□ -1.71
RNF4P78317 RPS29P22-201ENST00000472363 168 ntBASIC4.38□□□□□ -1.71
RNF4P78317 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.38□□□□□ -1.71
RNF4P78317 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.38□□□□□ -1.71
RNF4P78317 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.38□□□□□ -1.71
RNF4P78317 FKBP1BP1-201ENST00000553366 325 ntBASIC4.38□□□□□ -1.71
RNF4P78317 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.38□□□□□ -1.71
RNF4P78317 MIR4700-201ENST00000578311 74 ntBASIC4.38□□□□□ -1.71
RNF4P78317 AL158827.2-201ENST00000602494 330 ntBASIC4.38□□□□□ -1.71
RNF4P78317 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC4.38□□□□□ -1.71
RNF4P78317 AC020634.1-201ENST00000608701 549 ntBASIC4.38□□□□□ -1.71
RNF4P78317 MIR6780A-201ENST00000615089 68 ntBASIC4.38□□□□□ -1.71
RNF4P78317 AC015914.2-201ENST00000618167 288 ntBASIC4.38□□□□□ -1.71
RNF4P78317 AL360181.4-201ENST00000621752 134 ntBASIC4.38□□□□□ -1.71
RNF4P78317 AL691447.3-201ENST00000635020 330 ntBASIC4.38□□□□□ -1.71
RNF4P78317 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
RNF4P78317 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
RNF4P78317 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
RNF4P78317 AL136164.3-201ENST00000624429 3978 ntBASIC4.37□□□□□ -1.71
RNF4P78317 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
RNF4P78317 AL133412.1-201ENST00000380194 2992 ntBASIC4.37□□□□□ -1.71
RNF4P78317 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
RNF4P78317 RNA5SP28-201ENST00000363841 119 ntBASIC4.37□□□□□ -1.71
RNF4P78317 RNU6-335P-201ENST00000364563 113 ntBASIC4.37□□□□□ -1.71
RNF4P78317 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
RNF4P78317 RN7SKP267-201ENST00000410381 285 ntBASIC4.37□□□□□ -1.71
RNF4P78317 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC4.37□□□□□ -1.71
RNF4P78317 CKS1BP6-201ENST00000424932 240 ntBASIC4.37□□□□□ -1.71
RNF4P78317 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC4.37□□□□□ -1.71
RNF4P78317 RPS3AP46-201ENST00000448352 682 ntBASIC4.37□□□□□ -1.71
RNF4P78317 AC073264.2-201ENST00000448886 166 ntBASIC4.37□□□□□ -1.71
RNF4P78317 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.37□□□□□ -1.71
RNF4P78317 AC010326.1-201ENST00000462726 602 ntBASIC4.37□□□□□ -1.71
RNF4P78317 AC107222.1-201ENST00000510899 637 ntBASIC4.37□□□□□ -1.71
RNF4P78317 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC4.37□□□□□ -1.71
RNF4P78317 AP000827.1-201ENST00000527814 258 ntBASIC4.37□□□□□ -1.71
RNF4P78317 AP006289.1-201ENST00000538089 277 ntBASIC4.37□□□□□ -1.71
RNF4P78317 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.37□□□□□ -1.71
RNF4P78317 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.37□□□□□ -1.71
RNF4P78317 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.37□□□□□ -1.71
RNF4P78317 AC078899.3-201ENST00000599065 212 ntBASIC4.37□□□□□ -1.71
RNF4P78317 AC009314.1-201ENST00000603871 304 ntBASIC4.37□□□□□ -1.71
RNF4P78317 HMGB1P24-202ENST00000615653 685 ntBASIC4.37□□□□□ -1.71
RNF4P78317 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.37□□□□□ -1.71
RNF4P78317 AL138825.1-201ENST00000618587 192 ntBASIC4.37□□□□□ -1.71
RNF4P78317 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.37□□□□□ -1.71
RNF4P78317 MIR8062-201ENST00000621515 85 ntBASIC4.37□□□□□ -1.71
RNF4P78317 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.37□□□□□ -1.71
RNF4P78317 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.71
RNF4P78317 MAPK10-303ENST00000641324 3959 ntBASIC4.37□□□□□ -1.71
RNF4P78317 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.37□□□□□ -1.71
RNF4P78317 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
RNF4P78317 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
RNF4P78317 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.37□□□□□ -1.71
RNF4P78317 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
RNF4P78317 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
RNF4P78317 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.37□□□□□ -1.71
RNF4P78317 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.36□□□□□ -1.71
RNF4P78317 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
RNF4P78317 AL672167.1-204ENST00000641875 3017 ntBASIC4.36□□□□□ -1.71
RNF4P78317 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
RNF4P78317 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.36□□□□□ -1.71
RNF4P78317 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.36□□□□□ -1.71
RNF4P78317 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
RNF4P78317 AC079741.1-201ENST00000321498 212 ntBASIC4.36□□□□□ -1.71
RNF4P78317 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
RNF4P78317 DEFB108F-201ENST00000344638 222 ntBASIC4.36□□□□□ -1.71
RNF4P78317 RNU6-874P-201ENST00000362390 105 ntBASIC4.36□□□□□ -1.71
RNF4P78317 RNU6-1279P-201ENST00000383917 103 ntBASIC4.36□□□□□ -1.71
RNF4P78317 MIR521-1-201ENST00000384902 87 ntBASIC4.36□□□□□ -1.71
RNF4P78317 RPL21P1-201ENST00000399532 476 ntBASIC4.36□□□□□ -1.71
RNF4P78317 RPS16P5-201ENST00000406501 404 ntBASIC4.36□□□□□ -1.71
RNF4P78317 RN7SKP106-201ENST00000410832 272 ntBASIC4.36□□□□□ -1.71
RNF4P78317 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.36□□□□□ -1.71
RNF4P78317 Z85995.1-201ENST00000415547 335 ntBASIC4.36□□□□□ -1.71
RNF4P78317 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
RNF4P78317 AC140479.3-201ENST00000418944 1126 ntBASIC4.36□□□□□ -1.71
RNF4P78317 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.36□□□□□ -1.71
RNF4P78317 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.36□□□□□ -1.71
RNF4P78317 RPL7P2-201ENST00000427639 268 ntBASIC4.36□□□□□ -1.71
RNF4P78317 AC007919.1-201ENST00000429380 217 ntBASIC4.36□□□□□ -1.71
RNF4P78317 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC4.36□□□□□ -1.71
RNF4P78317 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms