Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.75□□□□□ -1.65
LIG3P49916 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.75□□□□□ -1.65
LIG3P49916 OR8R1P-201ENST00000543943 764 ntBASIC4.75□□□□□ -1.65
LIG3P49916 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.75□□□□□ -1.65
LIG3P49916 MIR3921-201ENST00000577308 85 ntBASIC4.75□□□□□ -1.65
LIG3P49916 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC4.75□□□□□ -1.65
LIG3P49916 MIR4330-201ENST00000579077 105 ntBASIC4.75□□□□□ -1.65
LIG3P49916 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
LIG3P49916 AL160281.1-201ENST00000605307 311 ntBASIC4.75□□□□□ -1.65
LIG3P49916 RMST_4.1-201ENST00000616886 107 ntBASIC4.75□□□□□ -1.65
LIG3P49916 SNORD39.4-201ENST00000620099 78 ntBASIC4.75□□□□□ -1.65
LIG3P49916 Z69720.2-201ENST00000624755 279 ntBASIC4.75□□□□□ -1.65
LIG3P49916 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.75□□□□□ -1.65
LIG3P49916 MAPK10-253ENST00000641010 4072 ntBASIC4.75□□□□□ -1.65
LIG3P49916 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
LIG3P49916 AC005592.1-201ENST00000566527 1640 ntBASIC4.75□□□□□ -1.65
LIG3P49916 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
LIG3P49916 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
LIG3P49916 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
LIG3P49916 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
LIG3P49916 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.74□□□□□ -1.65
LIG3P49916 RNA5SP505-201ENST00000364748 108 ntBASIC4.74□□□□□ -1.65
LIG3P49916 RNU6-398P-201ENST00000384143 109 ntBASIC4.74□□□□□ -1.65
LIG3P49916 Y_RNA.455-201ENST00000384230 98 ntBASIC4.74□□□□□ -1.65
LIG3P49916 AC096664.2-201ENST00000411843 406 ntBASIC4.74□□□□□ -1.65
LIG3P49916 SYF2P2-201ENST00000417620 583 ntBASIC4.74□□□□□ -1.65
LIG3P49916 AC243428.1-201ENST00000421099 264 ntBASIC4.74□□□□□ -1.65
LIG3P49916 HLA-N-201ENST00000437516 135 ntBASIC4.74□□□□□ -1.65
LIG3P49916 AC099799.1-201ENST00000439809 192 ntBASIC4.74□□□□□ -1.65
LIG3P49916 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC4.74□□□□□ -1.65
LIG3P49916 RN7SL738P-201ENST00000470264 297 ntBASIC4.74□□□□□ -1.65
LIG3P49916 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.74□□□□□ -1.65
LIG3P49916 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.74□□□□□ -1.65
LIG3P49916 AC022493.1-201ENST00000492984 337 ntBASIC4.74□□□□□ -1.65
LIG3P49916 AC108022.1-201ENST00000493466 478 ntBASIC4.74□□□□□ -1.65
LIG3P49916 RNU6-120P-201ENST00000516077 103 ntBASIC4.74□□□□□ -1.65
LIG3P49916 AC009643.1-201ENST00000532030 391 ntBASIC4.74□□□□□ -1.65
LIG3P49916 AL110118.1-201ENST00000553543 400 ntBASIC4.74□□□□□ -1.65
LIG3P49916 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.74□□□□□ -1.65
LIG3P49916 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.74□□□□□ -1.65
LIG3P49916 AC015912.2-201ENST00000571053 181 ntBASIC4.74□□□□□ -1.65
LIG3P49916 AC092447.9-201ENST00000603395 144 ntBASIC4.74□□□□□ -1.65
LIG3P49916 AL161798.1-201ENST00000604630 131 ntBASIC4.74□□□□□ -1.65
LIG3P49916 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.74□□□□□ -1.65
LIG3P49916 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
LIG3P49916 AL158163.1-201ENST00000603915 1649 ntBASIC4.74□□□□□ -1.65
LIG3P49916 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.74□□□□□ -1.65
LIG3P49916 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
LIG3P49916 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
LIG3P49916 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
LIG3P49916 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.74□□□□□ -1.65
LIG3P49916 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
LIG3P49916 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
LIG3P49916 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
LIG3P49916 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
LIG3P49916 Y_RNA.33-201ENST00000362591 102 ntBASIC4.73□□□□□ -1.65
LIG3P49916 U3.15-201ENST00000365398 212 ntBASIC4.73□□□□□ -1.65
LIG3P49916 HMGB3P2-201ENST00000411913 584 ntBASIC4.73□□□□□ -1.65
LIG3P49916 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.73□□□□□ -1.65
LIG3P49916 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC4.73□□□□□ -1.65
LIG3P49916 AL133396.1-201ENST00000432048 687 ntBASIC4.73□□□□□ -1.65
LIG3P49916 AC011816.1-201ENST00000441346 546 ntBASIC4.73□□□□□ -1.65
LIG3P49916 DAP3P1-201ENST00000441522 278 ntBASIC4.73□□□□□ -1.65
LIG3P49916 H2AFZP6-201ENST00000444403 394 ntBASIC4.73□□□□□ -1.65
LIG3P49916 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.73□□□□□ -1.65
LIG3P49916 AC079168.2-201ENST00000453977 416 ntBASIC4.73□□□□□ -1.65
LIG3P49916 AC133473.1-201ENST00000455173 299 ntBASIC4.73□□□□□ -1.65
LIG3P49916 RPL23AP31-201ENST00000456160 467 ntBASIC4.73□□□□□ -1.65
LIG3P49916 AC008571.1-201ENST00000467232 300 ntBASIC4.73□□□□□ -1.65
LIG3P49916 RN7SL354P-201ENST00000469282 294 ntBASIC4.73□□□□□ -1.65
LIG3P49916 RPS20P22-201ENST00000473700 357 ntBASIC4.73□□□□□ -1.65
LIG3P49916 AC068781.1-201ENST00000488231 618 ntBASIC4.73□□□□□ -1.65
LIG3P49916 AL359273.1-201ENST00000510918 627 ntBASIC4.73□□□□□ -1.65
LIG3P49916 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.73□□□□□ -1.65
LIG3P49916 MIR892C-201ENST00000516410 77 ntBASIC4.73□□□□□ -1.65
LIG3P49916 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.73□□□□□ -1.65
LIG3P49916 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.73□□□□□ -1.65
LIG3P49916 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4.73□□□□□ -1.65
LIG3P49916 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.73□□□□□ -1.65
LIG3P49916 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.73□□□□□ -1.65
LIG3P49916 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LIG3P49916 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.73□□□□□ -1.65
LIG3P49916 CDC27P3-201ENST00000635418 1910 ntBASIC4.73□□□□□ -1.65
LIG3P49916 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
LIG3P49916 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
LIG3P49916 MFSD8-216ENST00000641147 4009 ntBASIC4.73□□□□□ -1.65
LIG3P49916 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LIG3P49916 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
LIG3P49916 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LIG3P49916 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.72□□□□□ -1.65
LIG3P49916 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.72□□□□□ -1.65
LIG3P49916 RNA5SP502-201ENST00000362694 119 ntBASIC4.72□□□□□ -1.65
LIG3P49916 Y_RNA.176-201ENST00000363815 109 ntBASIC4.72□□□□□ -1.65
LIG3P49916 SNORA56-201ENST00000383966 129 ntBASIC4.72□□□□□ -1.65
LIG3P49916 RNU6-1181P-201ENST00000384191 106 ntBASIC4.72□□□□□ -1.65
LIG3P49916 RNU6-790P-201ENST00000384479 105 ntBASIC4.72□□□□□ -1.65
LIG3P49916 MIR1290-201ENST00000408735 78 ntBASIC4.72□□□□□ -1.65
LIG3P49916 AL030996.1-201ENST00000411430 235 ntBASIC4.72□□□□□ -1.65
LIG3P49916 AC011933.1-201ENST00000413334 321 ntBASIC4.72□□□□□ -1.65
LIG3P49916 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms