Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC3.01□□□□□ -1.93
HOXA1P49639 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.01□□□□□ -1.93
HOXA1P49639 MIR3138-201ENST00000585238 82 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXA1P49639 AC010525.2-201ENST00000590920 195 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 TEX41-238ENST00000604253 709 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXA1P49639 AL158032.1-201ENST00000605401 106 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 AC130324.3-201ENST00000614165 542 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 MIR6500-201ENST00000622700 86 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 AC112200.1-201ENST00000625015 234 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
HOXA1P49639 MIR492-201ENST00000638676 116 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXA1P49639 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.01□□□□□ -1.93
HOXA1P49639 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
HOXA1P49639 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXA1P49639 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXA1P49639 RNU6-552P-201ENST00000362869 119 ntBASIC3□□□□□ -1.93
HOXA1P49639 RNU4-20P-201ENST00000365601 151 ntBASIC3□□□□□ -1.93
HOXA1P49639 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3□□□□□ -1.93
HOXA1P49639 MIR514A1-201ENST00000385133 98 ntBASIC3□□□□□ -1.93
HOXA1P49639 MT-TL1-201ENST00000386347 75 ntBASIC3□□□□□ -1.93
HOXA1P49639 RNA5SP424-201ENST00000390988 115 ntBASIC3□□□□□ -1.93
HOXA1P49639 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3□□□□□ -1.93
HOXA1P49639 AC093578.1-201ENST00000415219 368 ntBASIC3□□□□□ -1.93
HOXA1P49639 ZNF90P2-204ENST00000419323 1075 ntBASIC3□□□□□ -1.93
HOXA1P49639 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3□□□□□ -1.93
HOXA1P49639 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3□□□□□ -1.93
HOXA1P49639 RPL21P133-201ENST00000443666 476 ntBASIC3□□□□□ -1.93
HOXA1P49639 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3□□□□□ -1.93
HOXA1P49639 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3□□□□□ -1.93
HOXA1P49639 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3□□□□□ -1.93
HOXA1P49639 VN1R34P-201ENST00000447387 883 ntBASIC3□□□□□ -1.93
HOXA1P49639 RPS3AP46-201ENST00000448352 682 ntBASIC3□□□□□ -1.93
HOXA1P49639 AL356010.1-201ENST00000456364 102 ntBASIC3□□□□□ -1.93
HOXA1P49639 RNU7-182P-201ENST00000459009 62 ntBASIC3□□□□□ -1.93
HOXA1P49639 GMFBP1-201ENST00000467831 427 ntBASIC3□□□□□ -1.93
HOXA1P49639 AC010618.1-201ENST00000469924 477 ntBASIC3□□□□□ -1.93
HOXA1P49639 MTCYBP18-201ENST00000501056 747 ntBASIC3□□□□□ -1.93
HOXA1P49639 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3□□□□□ -1.93
HOXA1P49639 AC018710.1-201ENST00000506509 158 ntBASIC3□□□□□ -1.93
HOXA1P49639 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3□□□□□ -1.93
HOXA1P49639 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3□□□□□ -1.93
HOXA1P49639 RNU6-507P-201ENST00000516045 100 ntBASIC3□□□□□ -1.93
HOXA1P49639 RNU6-123P-201ENST00000516163 102 ntBASIC3□□□□□ -1.93
HOXA1P49639 RNA5SP503-201ENST00000517047 117 ntBASIC3□□□□□ -1.93
HOXA1P49639 NRON-201ENST00000517270 370 ntBASIC3□□□□□ -1.93
HOXA1P49639 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3□□□□□ -1.93
HOXA1P49639 AC104027.1-201ENST00000521887 300 ntBASIC3□□□□□ -1.93
HOXA1P49639 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3□□□□□ -1.93
HOXA1P49639 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3□□□□□ -1.93
HOXA1P49639 AL121579.1-201ENST00000555129 305 ntBASIC3□□□□□ -1.93
HOXA1P49639 AL355836.1-201ENST00000555951 870 ntBASIC3□□□□□ -1.93
HOXA1P49639 NCAPGP2-201ENST00000557911 754 ntBASIC3□□□□□ -1.93
HOXA1P49639 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3□□□□□ -1.93
HOXA1P49639 AC060780.3-201ENST00000589464 80 ntBASIC3□□□□□ -1.93
HOXA1P49639 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3□□□□□ -1.93
HOXA1P49639 AC006557.5-201ENST00000603126 811 ntBASIC3□□□□□ -1.93
HOXA1P49639 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3□□□□□ -1.93
HOXA1P49639 DUXAP9-208ENST00000622815 614 ntBASIC3□□□□□ -1.93
HOXA1P49639 AC112484.5-201ENST00000624189 228 ntBASIC3□□□□□ -1.93
HOXA1P49639 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3□□□□□ -1.93
HOXA1P49639 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
HOXA1P49639 AC116096.1-201ENST00000566804 2314 ntBASIC3□□□□□ -1.93
HOXA1P49639 RLIMP1-201ENST00000339626 1680 ntBASIC3□□□□□ -1.93
HOXA1P49639 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3□□□□□ -1.93
HOXA1P49639 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
HOXA1P49639 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
HOXA1P49639 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
HOXA1P49639 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
HOXA1P49639 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC2.99□□□□□ -1.93
HOXA1P49639 HSP90AA4P-202ENST00000506915 2228 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
HOXA1P49639 Y_RNA.86-201ENST00000363020 111 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 SNORD56.3-201ENST00000363507 71 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 SNORA51.2-201ENST00000364595 132 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 RNU5E-4P-201ENST00000364931 120 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
HOXA1P49639 SNORD37.1-201ENST00000390968 65 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 RNU6-903P-201ENST00000391270 109 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AL022722.2-201ENST00000402519 180 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AL356776.1-201ENST00000406574 447 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 BTF3L4P3-201ENST00000418879 476 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AL451054.2-201ENST00000420896 202 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AC006989.1-201ENST00000427212 131 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 RPL7L1P10-201ENST00000427790 463 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 ATP5JP1-201ENST00000431631 322 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 VDAC1P3-201ENST00000434069 851 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 HMGB1P12-201ENST00000438594 598 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 DDX3P2-201ENST00000446138 111 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AL671855.1-201ENST00000446875 1203 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 MTND1P18-201ENST00000448191 573 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.99□□□□□ -1.93
HOXA1P49639 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXA1P49639 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXA1P49639 ELOCP23-201ENST00000452014 332 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AL590639.1-201ENST00000456484 337 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 RPL31P60-201ENST00000478450 367 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 RPS4XP13-201ENST00000483219 789 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms