Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC133134.1-201ENST00000466800 359 ntBASIC2.29□□□□□ -2.04
RFX3P48380 AHI1-208ENST00000488690 712 ntTSL 5 BASIC2.29□□□□□ -2.04
RFX3P48380 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.29□□□□□ -2.04
RFX3P48380 AC098591.2-201ENST00000510152 315 ntBASIC2.29□□□□□ -2.04
RFX3P48380 RNU1-104P-201ENST00000517280 175 ntBASIC2.29□□□□□ -2.04
RFX3P48380 AC105185.1-201ENST00000518705 535 ntBASIC2.29□□□□□ -2.04
RFX3P48380 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.29□□□□□ -2.04
RFX3P48380 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC2.29□□□□□ -2.04
RFX3P48380 AC023538.1-201ENST00000534576 736 ntBASIC2.29□□□□□ -2.04
RFX3P48380 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.29□□□□□ -2.04
RFX3P48380 AP002770.2-201ENST00000543613 532 ntBASIC2.29□□□□□ -2.04
RFX3P48380 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
RFX3P48380 AL359212.1-201ENST00000556608 614 ntBASIC2.29□□□□□ -2.04
RFX3P48380 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.29□□□□□ -2.04
RFX3P48380 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.29□□□□□ -2.04
RFX3P48380 AF038458.1-201ENST00000588406 262 ntBASIC2.29□□□□□ -2.04
RFX3P48380 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.29□□□□□ -2.04
RFX3P48380 AP000403.1-201ENST00000603349 851 ntBASIC2.29□□□□□ -2.04
RFX3P48380 OR10AB1P-201ENST00000609613 938 ntBASIC2.29□□□□□ -2.04
RFX3P48380 AL136981.2-201ENST00000617319 734 ntBASIC2.29□□□□□ -2.04
RFX3P48380 OR4G3P-201ENST00000633500 913 ntBASIC2.29□□□□□ -2.04
RFX3P48380 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
RFX3P48380 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
RFX3P48380 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
RFX3P48380 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.29□□□□□ -2.04
RFX3P48380 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.28□□□□□ -2.04
RFX3P48380 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
RFX3P48380 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.28□□□□□ -2.04
RFX3P48380 RNA5SP68-201ENST00000363885 119 ntBASIC2.28□□□□□ -2.04
RFX3P48380 RNU6-853P-201ENST00000364306 107 ntBASIC2.28□□□□□ -2.04
RFX3P48380 RNU6-750P-201ENST00000390946 107 ntBASIC2.28□□□□□ -2.04
RFX3P48380 ANAPC10P1-201ENST00000395991 556 ntBASIC2.28□□□□□ -2.04
RFX3P48380 MIR1305-201ENST00000408300 86 ntBASIC2.28□□□□□ -2.04
RFX3P48380 USP9YP13-201ENST00000417797 480 ntBASIC2.28□□□□□ -2.04
RFX3P48380 BPY2DP-201ENST00000422208 265 ntBASIC2.28□□□□□ -2.04
RFX3P48380 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.28□□□□□ -2.04
RFX3P48380 MTCO3P30-201ENST00000426425 670 ntBASIC2.28□□□□□ -2.04
RFX3P48380 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.28□□□□□ -2.04
RFX3P48380 AC010153.1-201ENST00000432862 727 ntBASIC2.28□□□□□ -2.04
RFX3P48380 AP000542.1-201ENST00000448473 371 ntBASIC2.28□□□□□ -2.04
RFX3P48380 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC2.28□□□□□ -2.04
RFX3P48380 USP9YP25-201ENST00000457708 443 ntBASIC2.28□□□□□ -2.04
RFX3P48380 RNU7-26P-201ENST00000458980 63 ntBASIC2.28□□□□□ -2.04
RFX3P48380 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC2.28□□□□□ -2.04
RFX3P48380 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC2.28□□□□□ -2.04
RFX3P48380 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.28□□□□□ -2.04
RFX3P48380 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.28□□□□□ -2.04
RFX3P48380 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.28□□□□□ -2.04
RFX3P48380 NDUFB4P2-201ENST00000509515 391 ntBASIC2.28□□□□□ -2.04
RFX3P48380 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC2.28□□□□□ -2.04
RFX3P48380 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.28□□□□□ -2.04
RFX3P48380 AC110760.3-202ENST00000515177 371 ntBASIC2.28□□□□□ -2.04
RFX3P48380 SNORA31.11-201ENST00000516528 139 ntBASIC2.28□□□□□ -2.04
RFX3P48380 SCARNA11.3-201ENST00000517276 130 ntBASIC2.28□□□□□ -2.04
RFX3P48380 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.28□□□□□ -2.04
RFX3P48380 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC2.28□□□□□ -2.04
RFX3P48380 MTND4P33-201ENST00000556706 766 ntBASIC2.28□□□□□ -2.04
RFX3P48380 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.28□□□□□ -2.04
RFX3P48380 AC027807.1-201ENST00000559921 996 ntBASIC2.28□□□□□ -2.04
RFX3P48380 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC2.28□□□□□ -2.04
RFX3P48380 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.28□□□□□ -2.04
RFX3P48380 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC2.28□□□□□ -2.04
RFX3P48380 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC2.28□□□□□ -2.04
RFX3P48380 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.28□□□□□ -2.04
RFX3P48380 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC2.28□□□□□ -2.04
RFX3P48380 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC2.28□□□□□ -2.04
RFX3P48380 AL158042.1-201ENST00000605338 460 ntBASIC2.28□□□□□ -2.04
RFX3P48380 AC007349.4-201ENST00000608114 532 ntBASIC2.28□□□□□ -2.04
RFX3P48380 AC016597.2-201ENST00000613256 341 ntBASIC2.28□□□□□ -2.04
RFX3P48380 U4.3-201ENST00000621047 82 ntBASIC2.28□□□□□ -2.04
RFX3P48380 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.28□□□□□ -2.04
RFX3P48380 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.28□□□□□ -2.04
RFX3P48380 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC2.28□□□□□ -2.04
RFX3P48380 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
RFX3P48380 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
RFX3P48380 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
RFX3P48380 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
RFX3P48380 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.27□□□□□ -2.05
RFX3P48380 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
RFX3P48380 AC080128.1-201ENST00000474389 1917 ntBASIC2.27□□□□□ -2.05
RFX3P48380 SNORA67.1-201ENST00000364749 141 ntBASIC2.27□□□□□ -2.05
RFX3P48380 RNU1-51P-201ENST00000365345 176 ntBASIC2.27□□□□□ -2.05
RFX3P48380 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.27□□□□□ -2.05
RFX3P48380 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.27□□□□□ -2.05
RFX3P48380 HMGB1P49-201ENST00000418882 569 ntBASIC2.27□□□□□ -2.05
RFX3P48380 SKA2P1-201ENST00000425592 390 ntBASIC2.27□□□□□ -2.05
RFX3P48380 FCF1P1-201ENST00000432690 571 ntBASIC2.27□□□□□ -2.05
RFX3P48380 Z80107.1-201ENST00000436830 412 ntBASIC2.27□□□□□ -2.05
RFX3P48380 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
RFX3P48380 MTATP6P30-201ENST00000443540 664 ntBASIC2.27□□□□□ -2.05
RFX3P48380 COX6CP12-201ENST00000446748 202 ntBASIC2.27□□□□□ -2.05
RFX3P48380 TPT1P14-201ENST00000448018 505 ntBASIC2.27□□□□□ -2.05
RFX3P48380 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
RFX3P48380 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC2.27□□□□□ -2.05
RFX3P48380 AC073901.1-201ENST00000462471 408 ntBASIC2.27□□□□□ -2.05
RFX3P48380 AL160314.1-201ENST00000490836 438 ntBASIC2.27□□□□□ -2.05
RFX3P48380 AC106872.3-201ENST00000495104 446 ntBASIC2.27□□□□□ -2.05
RFX3P48380 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
RFX3P48380 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
RFX3P48380 HMGB3P3-201ENST00000510526 400 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms