Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.86□□□□□ -1.95
SOX3P41225 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.86□□□□□ -1.95
SOX3P41225 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.86□□□□□ -1.95
SOX3P41225 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.86□□□□□ -1.95
SOX3P41225 RPL31P60-201ENST00000478450 367 ntBASIC2.86□□□□□ -1.95
SOX3P41225 AC004924.1-201ENST00000480160 781 ntBASIC2.86□□□□□ -1.95
SOX3P41225 AL049874.1-201ENST00000489560 388 ntBASIC2.86□□□□□ -1.95
SOX3P41225 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.86□□□□□ -1.95
SOX3P41225 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
SOX3P41225 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.86□□□□□ -1.95
SOX3P41225 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.86□□□□□ -1.95
SOX3P41225 RNU6-390P-201ENST00000516259 103 ntBASIC2.86□□□□□ -1.95
SOX3P41225 SCARNA15.2-201ENST00000516409 127 ntBASIC2.86□□□□□ -1.95
SOX3P41225 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.86□□□□□ -1.95
SOX3P41225 AC022616.3-201ENST00000523940 148 ntBASIC2.86□□□□□ -1.95
SOX3P41225 AP003392.2-201ENST00000527269 208 ntBASIC2.86□□□□□ -1.95
SOX3P41225 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.86□□□□□ -1.95
SOX3P41225 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.86□□□□□ -1.95
SOX3P41225 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.86□□□□□ -1.95
SOX3P41225 ARL2BPP2-201ENST00000550907 489 ntBASIC2.86□□□□□ -1.95
SOX3P41225 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.86□□□□□ -1.95
SOX3P41225 AC146944.4-201ENST00000602697 718 ntBASIC2.86□□□□□ -1.95
SOX3P41225 AL136363.2-201ENST00000604173 851 ntBASIC2.86□□□□□ -1.95
SOX3P41225 AL161734.1-201ENST00000609720 557 ntBASIC2.86□□□□□ -1.95
SOX3P41225 AC090132.2-201ENST00000615881 347 ntBASIC2.86□□□□□ -1.95
SOX3P41225 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.86□□□□□ -1.95
SOX3P41225 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
SOX3P41225 MIR622-201ENST00000638396 96 ntBASIC2.86□□□□□ -1.95
SOX3P41225 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
SOX3P41225 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
SOX3P41225 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
SOX3P41225 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
SOX3P41225 AC118273.1-201ENST00000525324 3006 ntBASIC2.86□□□□□ -1.95
SOX3P41225 AC008568.2-201ENST00000623862 2313 ntBASIC2.86□□□□□ -1.95
SOX3P41225 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
SOX3P41225 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
SOX3P41225 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
SOX3P41225 OR4G2P-202ENST00000641004 1759 ntBASIC2.85□□□□□ -1.95
SOX3P41225 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
SOX3P41225 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
SOX3P41225 RNU5E-6P-201ENST00000365574 115 ntBASIC2.85□□□□□ -1.95
SOX3P41225 DYNLT3P1-201ENST00000378574 347 ntBASIC2.85□□□□□ -1.95
SOX3P41225 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
SOX3P41225 AL138885.1-201ENST00000405921 675 ntBASIC2.85□□□□□ -1.95
SOX3P41225 BMS1P22-201ENST00000414726 313 ntBASIC2.85□□□□□ -1.95
SOX3P41225 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.85□□□□□ -1.95
SOX3P41225 RPL7L1P10-201ENST00000427790 463 ntBASIC2.85□□□□□ -1.95
SOX3P41225 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.85□□□□□ -1.95
SOX3P41225 AL356867.1-201ENST00000429623 299 ntBASIC2.85□□□□□ -1.95
SOX3P41225 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.85□□□□□ -1.95
SOX3P41225 RPL31P35-201ENST00000431058 377 ntBASIC2.85□□□□□ -1.95
SOX3P41225 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.85□□□□□ -1.95
SOX3P41225 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.85□□□□□ -1.95
SOX3P41225 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.85□□□□□ -1.95
SOX3P41225 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.85□□□□□ -1.95
SOX3P41225 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.85□□□□□ -1.95
SOX3P41225 SNORD97-201ENST00000459187 142 ntBASIC2.85□□□□□ -1.95
SOX3P41225 AC138853.1-201ENST00000503549 823 ntBASIC2.85□□□□□ -1.95
SOX3P41225 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.85□□□□□ -1.95
SOX3P41225 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.85□□□□□ -1.95
SOX3P41225 MTND2P33-201ENST00000506452 1031 ntBASIC2.85□□□□□ -1.95
SOX3P41225 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.85□□□□□ -1.95
SOX3P41225 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.85□□□□□ -1.95
SOX3P41225 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.85□□□□□ -1.95
SOX3P41225 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.85□□□□□ -1.95
SOX3P41225 AC009063.1-201ENST00000563342 702 ntBASIC2.85□□□□□ -1.95
SOX3P41225 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.85□□□□□ -1.95
SOX3P41225 AC078795.2-201ENST00000602835 1252 ntBASIC2.85□□□□□ -1.95
SOX3P41225 AC073648.5-201ENST00000603502 305 ntBASIC2.85□□□□□ -1.95
SOX3P41225 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.85□□□□□ -1.95
SOX3P41225 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
SOX3P41225 AL355596.1-201ENST00000565399 3996 ntBASIC2.85□□□□□ -1.95
SOX3P41225 AC092447.7-201ENST00000422212 1621 ntBASIC2.85□□□□□ -1.95
SOX3P41225 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.85□□□□□ -1.95
SOX3P41225 AC090740.1-201ENST00000623193 2262 ntBASIC2.85□□□□□ -1.95
SOX3P41225 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
SOX3P41225 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
SOX3P41225 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC2.84□□□□□ -1.95
SOX3P41225 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.84□□□□□ -1.95
SOX3P41225 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.84□□□□□ -1.95
SOX3P41225 HSPE1P11-201ENST00000339579 310 ntBASIC2.84□□□□□ -1.95
SOX3P41225 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
SOX3P41225 SNORD56.2-201ENST00000363242 71 ntBASIC2.84□□□□□ -1.95
SOX3P41225 RNY1P12-201ENST00000364251 105 ntBASIC2.84□□□□□ -1.95
SOX3P41225 RNU5A-6P-201ENST00000384136 116 ntBASIC2.84□□□□□ -1.95
SOX3P41225 SNORA54-201ENST00000384281 123 ntBASIC2.84□□□□□ -1.95
SOX3P41225 Y_RNA.517-201ENST00000384551 106 ntBASIC2.84□□□□□ -1.95
SOX3P41225 MIR493-201ENST00000385254 89 ntBASIC2.84□□□□□ -1.95
SOX3P41225 RNU2-36P-201ENST00000410361 191 ntBASIC2.84□□□□□ -1.95
SOX3P41225 RN7SKP58-201ENST00000411010 305 ntBASIC2.84□□□□□ -1.95
SOX3P41225 AC096664.2-201ENST00000411843 406 ntBASIC2.84□□□□□ -1.95
SOX3P41225 AL451054.2-201ENST00000420896 202 ntBASIC2.84□□□□□ -1.95
SOX3P41225 RPS12P18-201ENST00000442381 270 ntBASIC2.84□□□□□ -1.95
SOX3P41225 MTATP6P30-201ENST00000443540 664 ntBASIC2.84□□□□□ -1.95
SOX3P41225 AC020550.1-201ENST00000447385 163 ntBASIC2.84□□□□□ -1.95
SOX3P41225 AC079448.1-201ENST00000449377 373 ntBASIC2.84□□□□□ -1.95
SOX3P41225 MTND2P24-201ENST00000453434 806 ntBASIC2.84□□□□□ -1.95
SOX3P41225 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC2.84□□□□□ -1.95
SOX3P41225 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.84□□□□□ -1.95
SOX3P41225 AC105252.1-201ENST00000503089 286 ntBASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms